FC920309

Overview
NameFC920309
Unique NameFC920309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig571 contig Ccv1_Contig571:4..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.583e-39
Identity = 84/214 (39.25%), Postives = 122/214 (57.01%), Query Frame = 1
Query:   67 RDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            R+ LE + + L  EK   F++CI WARL+F+ +F+N ++QL+F FP+D+ TSTG PFWS PKR P PL F   +  H  F++AA+ L A  +G+       +P +    +     P F  K   KI  +E      TA+  D   +  +   L      +  GFRL P +FEKDDD+N+H+D I   +N+RA NY I   D+ K KF+AG+I+P
Sbjct:  645 REVLENIRDYLVTEKPLSFEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHFDFIVAAASLYAFNYGLKS---ETDPAIYERVLAGYNPPPFAPKSGIKIQVNENEEAPETAANKDKQELKSIADSLPPPSSLV--GFRLTPAEFEKDDDSNHHIDFITAASNLRAMNYDITPADRFKTKFVAGKIVP 853          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.673e-36
Identity = 83/222 (37.39%), Postives = 132/222 (59.46%), Query Frame = 1
Query:   61 QARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLLKKDAKI-LTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            Q  + LE +   L  ++ + + DC+TWA   +   +S+ ++QL+  FP    TS+GA FWS PKR PHPL F   +P HL +VMAA+ L A+T+G+     + +  ++A+ +  + VP F  K   +I +++++  + S  ++DD+         LE+ +  LP+     GF++ PI FEKDDD+N+HMD I   +N+RA NY I   D+ K+K IAG+IIP
Sbjct:  682 QPLEVLEAIHCSLVLQRPQTWADCVTWAYQHWHTQYSHNIQQLLHNFPPAQLTSSGALFWSGPKRCPHPLTFDINNPLHLDYVMAAANLFAQTYGL---GGSQDCAVVAKLLQSLPVPKFAPKSGIRIHVSEQELQSTSATTIDDS--------HLEELKTALPTPDKLLGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYGISPADRHKSKLIAGKIIP 892          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA6_MOUSE (Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus GN=Uba6 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 75/222 (33.78%), Postives = 119/222 (53.60%), Query Frame = 1
Query:   55 DAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLLKKDAKIL-TDEKATTLSTASVDDAAVINDLIIKLEQC---RKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            + Q+ +   +V++ L +    I+  C+  ARLKFE YF+++  QL+  FP +     G+ FW +PKR P P++F   +P HL F+ +A+ L A  + IP  +   +   L + + +V + +F  K   K++ TDE A       V      N  + +LE+     K   S  ++  + FEKDDD N H+D I   +N+RA+ YSI   D+ K K IAG+IIP
Sbjct:  675 NGQSLEGCFQVIKLLSRRP-RIWSQCVELARLKFEKYFNHKALQLLHCFPLETRLKDGSLFWQSPKRPPSPIKFDLNEPLHLSFLQSAAKLYATVYCIPFSEKDLSVNSLMDILSEVKIEEF--KPSNKVVQTDETARKPDHVPVSSEDERN-AVFQLEEALSSNKATKSDLQMTVLSFEKDDDRNGHIDFITAASNLRAKMYSIEPADRFKTKRIAGKIIP 892          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 77/226 (34.07%), Postives = 123/226 (54.42%), Query Frame = 1
Query:   34 TSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIP-IPDWTNNPKMLAEAVDKVMVPDFLLKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            TS+A+  + Q    L+ VL  L + + + +QDC+ WA   ++  F   +KQL+  FP +     G PFWS PK+ P PL+F +   +HL +V+AA+ L A+  G+P   DWT   ++L            L + D + +    A+ L  AS   A    +   +L +  +    G  LKP+ FEKDDD+N+H+D +   A++R +NY IP V++ ++K I G+IIP
Sbjct:  638 TSLADMDEPQTLTLLKPVLGVL-RVRPQNWQDCVAWALGHWKLCFHYGIKQLLRHFPPNKVLEDGTPFWSGPKQCPQPLEFDTNQDTHLLYVLAAANLYAQMHGLPGSQDWTALRELL----------KLLPQPDPQQMAPIFASNLELASA-SAEFGPEQQKELNKALEVWSVGPPLKPLMFEKDDDSNFHVDFVVAAASLRCQNYGIPPVNRAQSKRIVGQIIP 851          
BLAST of FC920309 vs. ExPASy Swiss-Prot
Match: UBA6_HUMAN (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 71/200 (35.50%), Postives = 106/200 (53.00%), Query Frame = 1
Query:  121 FQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLLKKDAKIL-TDEKATTLSTASVDDAAVINDLIIKLEQC---RKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIP 708
            +  C+  ARLKFE YF+++  QL+  FP D     G+ FW +PKR P P++F   +P HL F+  A+ L A  + IP  +   +   L   + +V + +F  K   K++ TDE A       +      N  I +LE+     +   S  ++  + FEKDDD N H+D I   +N+RA+ YSI   D+ K K IAG+IIP
Sbjct:  696 WSQCVELARLKFEKYFNHKALQLLHCFPLDIRLKDGSLFWQSPKRPPSPIKFDLNEPLHLSFLQNAAKLYATVYCIPFAEEDLSADALLNILSEVKIQEF--KPSNKVVQTDETARKPDHVPISSEDERN-AIFQLEKAILSNEATKSDLQMAVLSFEKDDDHNGHIDFITAASNLRAKMYSIEPADRFKTKRIAGKIIP 892          
The following BLAST results are available for this feature:
BLAST of FC920309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBA1_SCHPO2.583e-3939.25Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]
UBA1Y_MOUSE2.673e-3637.39Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBA6_MOUSE7.794e-2833.78Ubiquitin-like modifier-activating enzyme 6 OS=Mus... [more]
UBA7_HUMAN2.268e-2734.07Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]
UBA6_HUMAN4.277e-2635.50Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC32006F11EF RVDevelop1 Citrus clementina cDNA clone C32006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920309 ID=FC920309; Name=FC920309; organism=Citrus clementina; type=EST; length=708bp
GAATGCCTATCTATCAACCCAGTTGAATACACTACTTCTATGGCTAATGC
AGGTGATGCTCAAGCTAGAGATAACTTGGAACGTGTCCTTGAGTGCCTTG
ACAAGGAGAAGTGCGAAATATTCCAGGACTGCATCACCTGGGCTCGTCTC
AAGTTTGAAGATTATTTTTCCAACCGAGTGAAGCAGTTGATCTTTACATT
TCCTGAAGATGCTGCTACCAGTACTGGGGCTCCATTCTGGTCTGCCCCAA
AGCGATTCCCTCATCCTCTTCAGTTCTCATCTGCGGATCCCAGTCACCTA
CACTTTGTTATGGCAGCCTCCATACTACGAGCAGAGACATTTGGCATCCC
TATTCCTGATTGGACCAATAATCCTAAGATGTTGGCTGAGGCTGTTGACA
AAGTGATGGTACCAGATTTTCTGCTAAAGAAAGATGCAAAAATCTTAACG
GATGAGAAGGCTACTACTCTCTCCACTGCTTCTGTGGATGATGCAGCGGT
AATTAATGATCTGATTATAAAGTTAGAGCAGTGCAGAAAGAACCTGCCAT
CTGGGTTCAGGTTGAAACCAATTCAGTTCGAAAAGGATGATGACACAAAC
TACCACATGGATATGATAGCTGGGCTTGCTAACATGAGGGCAAGGAACTA
TAGCATTCCTGAGGTCGACAAGCTGAAAGCCAAGTTTATTGCTGGAAGGA
TCATTCCA
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