FC920315

Overview
NameFC920315
Unique NameFC920315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 53/158 (33.54%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  223 RAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAI-CGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG----AEIIGTFVLVYTVF-SATDAKR 672
            +AG+AEF++TF+F++    + +  +K  ++   +  G+   + A    +F  V   A ISGGH+NPAV FG  +   ++L R + Y++ Q LG+I C A +V               ++V A G ++G G+G     EI+ TF LVYTV+ +A D K+
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLV-----------FVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK 166          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: YI7H_SCHPO (Uncharacterized membrane protein C977.17 OS=Schizosaccharomyces pombe GN=SPAC977.17 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 57/166 (34.34%), Postives = 72/166 (43.37%), Query Frame = 1
Query:  217 FYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQG------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKG--------FEGSKNYERLGGGANVVAHG---YTKGDGLGAEIIGTFVLVYTVFSATD 663
            F+R G AEF+ T       VL V GV  +     T G  G       AW FG M+   VY   GISGGH+NPAVT  L + RK    +   Y+  Q  GA  G  +  G        FEG K+      G  +  +     T  +    E IGT VLV  +F+  D
Sbjct:  309 FFREGFAEFLGTL------VLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLG--VYIAGGISGGHVNPAVTISLAIFRKFPWYKVPIYIFFQIWGAFFGGALAYGYHWSSITEFEGGKDIRTPATGGCLYTNPKPYVTWRNAFFDEFIGTAVLVGCLFAILD 466          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 1
Query:  214 SFYRAGIAEFMATF-LFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAH------GYTKGDGLGAEIIGTFVLVYTVFSATDAK 669
            S  +  +AEF+ TF L L      V+  +  N     +G  G++ AFG  +  + +    ISG HINPAV+ GL  A++   T  + Y+  Q LG I GAGV+    G K    L GG     +      GYT    L  E++ TF+ +  +  +TD +
Sbjct:    2 SLVKRSVAEFIGTFWLVLGGCGAAVLAAAFPNLG---IGFAGVSLAFGLTLLTMAFAIGHISGCHINPAVSIGLWAAKRFPATELLPYIAAQVLGGIAGAGVLYLIAGGKAGFSLSGGFASNGYGLHSPGGYTLLACLVCEVVMTFMFLMIILGSTDRR 157          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 52/156 (33.33%), Postives = 76/156 (48.72%), Query Frame = 1
Query:  223 RAGIAEFMATFLFLYI----TVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIG---TFVLVYTVFSATDAK 669
            RA  AEF +TFLF++I    T+   M      +  S++    +A AFG  +FA V+  A +SGGH+NPAVTF   +   +++  A+FY   Q LG+     V+             G A        +  G GA I+    TF++VYTV  A D +
Sbjct:   18 RAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFG--LFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYIS--------AGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVHVAGDPR 163          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 50/153 (32.68%), Postives = 73/153 (47.71%), Query Frame = 1
Query:  232 IAEFMATFLFLY-------ITVLTVMGVSKSNTKCSTVGIQG-------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTV 648
            IAEF+ TF+ ++       +T++   G +  N     +G+ G       I  AFG  I A +Y    ISG HINPAVT GL   +K      V Y++ Q LGA  G+ +     G       G GA     G +    + AE++GTF+L+ T+
Sbjct:    9 IAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITI 161          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 51/164 (31.10%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  208 SWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNY-------ERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 672
            S +  R  ++EF++TF F+   V +VM   K  +       G+   A A    + + VY +  +SGGH+NPAVTF + +A ++S+  A+FY   Q + ++    V+K     ++        E  G GA+V+            E +  FVLVYTVF+A+D +R
Sbjct:   18 SMNALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVL------------EGVLAFVLVYTVFTASDPRR 169          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  322 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGAN-----VVAHGYTKGDGLGAEIIGTFVLVYTVFSATDA 666
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +L     + Y V Q LGAI  A ++      K+    GG A+     +   GY+   GL  EII T   +  +  +T +
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSS 153          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  322 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGAN-----VVAHGYTKGDGLGAEIIGTFVLVYTVFSATDA 666
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +L     + Y V Q LGAI  A ++      K+    GG A+     +   GY+   GL  EII T   +  +  +T +
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSS 153          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  322 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGAN-----VVAHGYTKGDGLGAEIIGTFVLVYTVFSATDA 666
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +L     + Y V Q LGAI  A ++      K+    GG A+     +   GY+   GL  EII T   +  +  +T +
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSS 153          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQP2_TALEU (Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  208 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVV 519
            S +F RA  AEF+AT +F++  + + +     N + S   +  IA AFG  I  LV     ISG HINPAVT   L+   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVFAEFLATLIFVFFGLGSAL-----NWQQSLPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
The following BLAST results are available for this feature:
BLAST of FC920315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
TIP1_MEDSA2.648e-1233.54Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
YI7H_SCHPO3.458e-1234.34Uncharacterized membrane protein C977.17 OS=Schizo... [more]
AQPZ_GLOVI3.458e-1232.08Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
TIP51_ORYSJ5.898e-1233.33Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
AQPM_METTM1.006e-1132.68Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
TIP51_ARATH2.241e-1131.10Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
AQPZ_BRUME2.927e-1135.00Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
AQPZ_BRUAB2.927e-1135.00Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]
AQPZ_BRUA22.927e-1135.00Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
AQP2_TALEU2.927e-1140.38Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006G05EF RVDevelop1 Citrus clementina cDNA clone C32006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920315 ID=FC920315; Name=FC920315; organism=Citrus clementina; type=EST; length=703bp
CATACACAACACAAACACAGCATCTTCTTTGAGAGAATAAGAGAGCGAGA
GAGAGGTTCATCATCGTCAATGGAAGGCAAAGAAGAGGATGTTAAGCTAG
GAGCTAACAAGTTCTCAGAGAGGCAACCCATTGGGACATCAGCTCAATCA
GACAAAGACTACAAGGAGCCACCACCAGCACCTTTGTTTGAGCCTGGTGA
GCTCAAGTCATGGTCTTTTTACAGAGCTGGTATTGCAGAGTTCATGGCTA
CCTTCTTGTTCCTCTACATCACTGTCTTGACTGTCATGGGTGTCTCTAAG
TCTAACACCAAGTGCTCCACTGTCGGTATCCAAGGAATTGCTTGGGCCTT
TGGTGGCATGATCTTTGCCCTTGTTTACTGCACTGCTGGTATCTCAGGAG
GACACATCAACCCAGCAGTGACCTTCGGTCTGCTGCTAGCGAGGAAGCTT
TCCCTGACAAGAGCTGTCTTCTACATGGTCATGCAGTGCCTTGGTGCCAT
CTGTGGTGCTGGTGTTGTCAAGGGATTCGAAGGTTCAAAGAACTACGAGA
GGTTGGGTGGTGGAGCCAATGTTGTTGCTCACGGCTACACCAAGGGTGAT
GGTCTTGGTGCTGAGATTATTGGAACCTTTGTTCTTGTTTACACTGTCTT
CTCTGCCACTGATGCCAAGAGAAACGCCAGAGATTCTCATGTCCCCTATT
TGG
back to top