FC920315

Overview
NameFC920315
Unique NameFC920315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 59/161 (36.65%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  223 RAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVP 696
            RA +AEF++T LF++  V + +  +K  S+    T G+  IA   G  +F  V   A ISGGH+NPAVTFGL +  ++++   VFY + Q LG+     ++K   G      L    + VA G    +G+  EII TF LVYTV+ +A D K+ +  +  P
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGG-----LAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAP 174          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 56/161 (34.78%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 681
            E +S+SF+RA  AEF  T  +++      +G S          +  IA AFG ++  +V     +SG HINPAVTF  L+  ++SL RA+FY+  Q LGA+ GA V+ G   +     L    N +  G + G     EI  T   V  +F+  D +RN R
Sbjct:    3 EFRSFSFWRAVFAEFFGTMFYVFFG----LGASLK-WAAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNL--ALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 54/154 (35.06%), Postives = 84/154 (54.55%), Query Frame = 1
Query:  214 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGG-GANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 672
            + +R  +AEF+ TF  + I + +  G +  +   +      IA+ FG ++  L      +SG HINPAVT GL++   +S+ +  FY+V QC+GAI GA V+K    S   E +GG G   +A G + G G+  E + TF+LV+ V    D +R
Sbjct:   21 NIWRMLVAEFLGTFFLVAIGIGSTTGWTDYSPTLTQ-----IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPS---EVVGGLGVTGIAPGLSTGQGVLIEALITFMLVFVVHGVCDNRR 166          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 61/162 (37.65%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKS-NTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 681
            EL+S SF+RA +AEF+ + L+      T++G+  S        G+ G A AFG     LV     +SGGHINPA+T   LLA +LSL RA+ Y++ Q LGA+ GAGV+ G   +     LG  A   + G   G G   E++ T   +  VF++ D + + R
Sbjct:    3 ELRSSSFWRAILAEFLGSLLY------TLLGLGASLRWAPGPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAVRGTLGLSALHPSVG--PGQGTVVELLLTAQFILCVFASFDDRHDGR 156          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 53/155 (34.19%), Postives = 82/155 (52.90%), Query Frame = 1
Query:  214 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGG-GANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRN 675
            + +R  +AEF+ TF  + I + + MG         T     IA+ FG ++  L      +SG HINPAVT GL++   +S+ +  FY+V QC+GAI GA ++K    S   + +GG G   +    T G G+  E + TF+LV+ V    D +R+
Sbjct:   21 NIWRMLVAEFLGTFFLVSIGIGSTMGWGGDYAPTMTQ----IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLMITADISILKGAFYIVSQCVGAIAGAALIKAATPS---DVIGGLGVTGIDPRLTAGQGVMIEALITFILVFVVHGVCDNRRS 168          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 59/174 (33.91%), Postives = 91/174 (52.30%), Query Frame = 1
Query:  196 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVP 696
            G+  S S  +A ++EF+AT LF++  V + +  +K  S+      G+  IA A    +F  V   A ISGGH+NPAVT GL +   ++L    FY + QCLG+I    ++           +  G +V  HG + G    +G+  EI+ TF LVYTV+ +A D K+ +  +  P
Sbjct:   10 GDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLL---------VFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAP 174          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSH 690
            EL+S +F RA +AEF+AT LF++  + + +     N   +   +  IA AFG  I  LV     +SG HINPAVT   L+   +S  RAVFY+  Q LGA+ GA ++   E +    R     N + +  T G  +  E+  T  LV  +F +TD +R  +  H
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL--HEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFPSTDKRRGKQLGH 159          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 58/161 (36.02%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 681
            EL+S SF+RA  AEF AT  +++      +G S   T    + +  +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  YM  Q LGA+ GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 57/161 (35.40%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 681
            EL+S SF+RA  AEF AT  +++      +G S        + +  +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA+ YM  Q LGA+ GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVL--YSVTPAAVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 57/158 (36.08%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 672
            EL+S +F RA +AEF+AT LF++  + + +     N   +   +  IA AFG  I  LV     +SG HINPAVT   L+   +S  RAVFY+  Q LGA+ GA ++   E +    R     N + +  T G  +  E+  T  LV  +F++TD +R
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL--HEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFASTDERR 153          
The following BLAST results are available for this feature:
BLAST of FC920315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
TIP21_ARATH1.602e-1736.65Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
MIP_RANPI3.570e-1734.78Lens fiber major intrinsic protein OS=Rana pipiens... [more]
AQP_ANOGA3.570e-1735.06Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
MIP_CHICK7.953e-1737.65Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP_AEDAE7.953e-1734.19Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]
TIP23_ARATH2.314e-1633.91Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
AQP2_SHEEP2.314e-1635.37Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
MIP_CANFA3.022e-1636.02Lens fiber major intrinsic protein OS=Canis famili... [more]
MIP_RABIT3.947e-1635.40Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQP2_BOVIN3.947e-1636.08Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32006G05EF RVDevelop1 Citrus clementina cDNA clone C32006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920315 ID=FC920315; Name=FC920315; organism=Citrus clementina; type=EST; length=703bp
CATACACAACACAAACACAGCATCTTCTTTGAGAGAATAAGAGAGCGAGA
GAGAGGTTCATCATCGTCAATGGAAGGCAAAGAAGAGGATGTTAAGCTAG
GAGCTAACAAGTTCTCAGAGAGGCAACCCATTGGGACATCAGCTCAATCA
GACAAAGACTACAAGGAGCCACCACCAGCACCTTTGTTTGAGCCTGGTGA
GCTCAAGTCATGGTCTTTTTACAGAGCTGGTATTGCAGAGTTCATGGCTA
CCTTCTTGTTCCTCTACATCACTGTCTTGACTGTCATGGGTGTCTCTAAG
TCTAACACCAAGTGCTCCACTGTCGGTATCCAAGGAATTGCTTGGGCCTT
TGGTGGCATGATCTTTGCCCTTGTTTACTGCACTGCTGGTATCTCAGGAG
GACACATCAACCCAGCAGTGACCTTCGGTCTGCTGCTAGCGAGGAAGCTT
TCCCTGACAAGAGCTGTCTTCTACATGGTCATGCAGTGCCTTGGTGCCAT
CTGTGGTGCTGGTGTTGTCAAGGGATTCGAAGGTTCAAAGAACTACGAGA
GGTTGGGTGGTGGAGCCAATGTTGTTGCTCACGGCTACACCAAGGGTGAT
GGTCTTGGTGCTGAGATTATTGGAACCTTTGTTCTTGTTTACACTGTCTT
CTCTGCCACTGATGCCAAGAGAAACGCCAGAGATTCTCATGTCCCCTATT
TGG
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