FC920315

Overview
NameFC920315
Unique NameFC920315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 56/168 (33.33%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  196 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRNA 678
            G+  S +  +A +AEF+AT LF++  V + +  +K  S+      G+  +A A    +F  V   A +SGGH+NPAVT GL +   +++   +FY + QCLG+     ++K          +  G +V  HG   G     G+  EII TF LVYTV+ +A D K+ +
Sbjct:   10 GDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK---------FVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS 168          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 58/163 (35.58%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  223 RAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEG--SKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVP 696
            +A +AEF++T +F++  V + +  +K          G+  +A   G  +F  V   A ISGGH+NPAVTFGL L  ++++   VFY + Q LGAI GA +V+   G  +  +   G GA          +G+  EII TF LVYTV+ +A D K+ +  +  P
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHGLSGVGA---------FEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAP 173          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 57/161 (35.40%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 681
            EL+S SF+RA  AEF AT  +++      +G S        + +  +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA+ Y+V Q LGA+ GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 57/161 (35.40%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 681
            EL+S SF+RA  AEF A+  +++      +G S        + +  +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA+ YMV Q LGA+ GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 672
            EL+S +F RA  AEF+AT LF++  + + +     N   +   +  IA AFG  I  LV     ISG HINPAVT   L+   +S+ RA FY+  Q LGA+ GA ++     +     L    N +++  T G  +  E+  T  LV  +F++TD +R
Sbjct:    3 ELRSIAFSRAVFAEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLGIGTLVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPADIRGDL--AVNALSNSTTAGQAVTVELFLTLQLVLCIFASTDERR 153          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 56/174 (32.18%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  196 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVP 696
            G+  S +  +A ++EF+AT LF++  V + +  +K  S+      G+  +A A    +F  V   A ISGGH+NPAVT GL +   +++    FY + QCLG+I    ++           +  G +V  HG   G    +G+  EI+ TF LVYTV+ +A D K+ +  +  P
Sbjct:   10 GDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLL---------VFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAP 174          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRN 675
            EL+S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT   L+   +S  RA FY+  Q LGA+ GA ++   E +    R     N + +  T G  +  E+  T  LV  +F++TD +R+
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRS 154          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.341e-15
Identity = 57/160 (35.62%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  223 RAGIAEFMATFLFLYITVLTVMGVSK------SNTKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNA 678
            RA +AEF++TF+F++    +++ + K      ++T  +T G +  +A A    +FA V     +SGGH+NPAVTF  L+  ++S+ RA++Y V Q +GAI    +++    +     +G     VA G ++  GL  EII TF LVY V+S A D KR +
Sbjct:   24 RATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLR--LATNGLRPVGFH---VASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS 178          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.341e-15
Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 681
            EL+S SF+RA  AEF AT  +++  +      S        + +  +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  Y+  Q LGA+ GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGR 154          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 56/161 (34.78%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 681
            EL+S SF+RA  AEF AT  +++      +G S        + +  +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  Y+  Q LGA+ GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGR 156          
The following BLAST results are available for this feature:
BLAST of FC920315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
TIP_ANTMA5.155e-1633.33Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP22_ORYSJ6.733e-1635.58Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
MIP_SHEEP6.733e-1635.40Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_BOVIN8.793e-1635.40Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP2_HUMAN8.793e-1635.44Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
TIP22_ARATH1.148e-1532.18Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
AQP2_MOUSE2.558e-1535.22Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP32_ARATH3.341e-1535.63Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
MIP_RAT3.341e-1534.16Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE4.364e-1534.78Lens fiber major intrinsic protein OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC32006G05EF RVDevelop1 Citrus clementina cDNA clone C32006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920315 ID=FC920315; Name=FC920315; organism=Citrus clementina; type=EST; length=703bp
CATACACAACACAAACACAGCATCTTCTTTGAGAGAATAAGAGAGCGAGA
GAGAGGTTCATCATCGTCAATGGAAGGCAAAGAAGAGGATGTTAAGCTAG
GAGCTAACAAGTTCTCAGAGAGGCAACCCATTGGGACATCAGCTCAATCA
GACAAAGACTACAAGGAGCCACCACCAGCACCTTTGTTTGAGCCTGGTGA
GCTCAAGTCATGGTCTTTTTACAGAGCTGGTATTGCAGAGTTCATGGCTA
CCTTCTTGTTCCTCTACATCACTGTCTTGACTGTCATGGGTGTCTCTAAG
TCTAACACCAAGTGCTCCACTGTCGGTATCCAAGGAATTGCTTGGGCCTT
TGGTGGCATGATCTTTGCCCTTGTTTACTGCACTGCTGGTATCTCAGGAG
GACACATCAACCCAGCAGTGACCTTCGGTCTGCTGCTAGCGAGGAAGCTT
TCCCTGACAAGAGCTGTCTTCTACATGGTCATGCAGTGCCTTGGTGCCAT
CTGTGGTGCTGGTGTTGTCAAGGGATTCGAAGGTTCAAAGAACTACGAGA
GGTTGGGTGGTGGAGCCAATGTTGTTGCTCACGGCTACACCAAGGGTGAT
GGTCTTGGTGCTGAGATTATTGGAACCTTTGTTCTTGTTTACACTGTCTT
CTCTGCCACTGATGCCAAGAGAAACGCCAGAGATTCTCATGTCCCCTATT
TGG
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