FC920315

Overview
NameFC920315
Unique NameFC920315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 672
            EL+S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT   L+   +S  RA FY+  Q LGA+ GA ++   E +    R     N + +  T G  +  E+  T  LV  +F++TD +R
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERR 153          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 54/161 (33.54%), Postives = 78/161 (48.45%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 681
            EL+S SF+RA  AEF AT  +++  +      S        + +  +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  YM  Q LGA+ GA V+  +  +    R     N +    + G     EI  T   V  +F+  D +RN +
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQ 156          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 52/157 (33.12%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  223 RAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG----AEIIGTFVLVYTVF-SATDAKR 672
            +AG+AEF++TF+F++    + +  +K  ++   +  G+   + A    +F  V   A ISGGH+NPAVTFG  +   ++L R + Y++ Q LG+I  + ++     S          +V A G ++G G+G     EI+ TF LVYTV+ +A D K+
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTAS----------SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK 167          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 56/161 (34.78%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  199 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 681
            EL+S SF+RA  AEF AT  +++      +G S        + +  +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  YM  Q LGA+ GA V+  +  +    R     N +  G +       EI  T   V  +F+  D +RN R
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 1
Query:  187 FEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVP 696
            F  G LK++      +AEF+AT LF++  V + +  +K  ++      G+  +A A    +F  V   A ISGGH+NPAVT GL +   +++    FY + Q LG+     ++K          +  G  V  HG   G     G+  EII TF LVYTV+ +A D K+ +  +  P
Sbjct:   13 FSVGSLKAY------VAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLK---------YVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAP 174          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 1
Query:  187 FEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVP 696
            F  G LK++      +AEF+AT LF++  V + +  +K  ++      G+  +A A    +F  V   A ISGGH+NPAVT GL +   +++    FY + Q LG+     ++K          +  G  V  HG   G     G+  EII TF LVYTV+ +A D K+ +  +  P
Sbjct:   13 FSVGSLKAY------VAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLK---------YVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAP 174          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 54/161 (33.54%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  214 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVP 696
            + +R   AE + T L + I   +  GV  S        +  IA  FG +I  +V C   +SG HINPAVT GLL+   +S+ +A+FY+++QC+GAI G+ ++K    ++    L      +A G T   G   E   TFVL+  V S  D +R    +  P
Sbjct:   24 TIWRCLAAELIGTLLLVLIGTGSCTGVQISEGDV----VVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEFRGTL--CMTSLAPGVTPPMGFLVEACITFVLILLVQSVCDDRRKNLGNAAP 178          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 53/161 (32.92%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  223 RAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVF-SATDAKRNA 678
            RA +AEF +TF+F++    + + + K   ++  S   +  +A A    +FA V  +  +SGGH+NPAV+FG L+  ++S+ RAV+Y + Q LG+I  A V++               N+   G+    G+G       E++ TF L+YTV+ +A D KR A
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN-----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA 170          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 57/170 (33.53%), Postives = 88/170 (51.76%), Query Frame = 1
Query:  196 GELKSWSFYRAGIAEFMATFLFLYITVLTVM--GVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVP 696
            G+  S +  +A +AEF+AT LF++  V + +  G   +       G+  IA A    +F  V   A  SGGH+NPAVTFGL +   +++   +FY V Q LGA     +++     K     G     V+ G T+ +G+  EI+ TF LVYTV+ +A D K+ +  +  P
Sbjct:   10 GDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHG-----VSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGTIAP 174          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 56/170 (32.94%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  196 GELKSWSFYRAGIAEFMATFLFLYITVLTVM--GVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVP 696
            G+  S +  +A +AEF+AT LF++  V + +  G   +       G+  IA A    +F  V   A ISGGH+NPAVTFGL +   +++   +FY + Q LGA     ++K     K     G        G ++ +G+  EI+ TF LVYTV+ +A D K+ +  +  P
Sbjct:   10 GDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHG------VAGISELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAP 173          
The following BLAST results are available for this feature:
BLAST of FC920315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
AQP2_RAT4.364e-1535.44Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
MIP_HUMAN1.270e-1433.54Lens fiber major intrinsic protein OS=Homo sapiens... [more]
TIP1_MEDTR1.658e-1433.12Probable aquaporin TIP-type OS=Medicago truncatula... [more]
MIP_CAVPO1.658e-1434.78Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIP2_TOBAC2.166e-1432.20Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC2.166e-1432.20Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
AQP_CICVR2.829e-1433.54Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
TIPA_PHAVU3.694e-1432.92Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP22_MAIZE3.694e-1433.53Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP21_ORYSJ3.694e-1432.94Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006G05EF RVDevelop1 Citrus clementina cDNA clone C32006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920315 ID=FC920315; Name=FC920315; organism=Citrus clementina; type=EST; length=703bp
CATACACAACACAAACACAGCATCTTCTTTGAGAGAATAAGAGAGCGAGA
GAGAGGTTCATCATCGTCAATGGAAGGCAAAGAAGAGGATGTTAAGCTAG
GAGCTAACAAGTTCTCAGAGAGGCAACCCATTGGGACATCAGCTCAATCA
GACAAAGACTACAAGGAGCCACCACCAGCACCTTTGTTTGAGCCTGGTGA
GCTCAAGTCATGGTCTTTTTACAGAGCTGGTATTGCAGAGTTCATGGCTA
CCTTCTTGTTCCTCTACATCACTGTCTTGACTGTCATGGGTGTCTCTAAG
TCTAACACCAAGTGCTCCACTGTCGGTATCCAAGGAATTGCTTGGGCCTT
TGGTGGCATGATCTTTGCCCTTGTTTACTGCACTGCTGGTATCTCAGGAG
GACACATCAACCCAGCAGTGACCTTCGGTCTGCTGCTAGCGAGGAAGCTT
TCCCTGACAAGAGCTGTCTTCTACATGGTCATGCAGTGCCTTGGTGCCAT
CTGTGGTGCTGGTGTTGTCAAGGGATTCGAAGGTTCAAAGAACTACGAGA
GGTTGGGTGGTGGAGCCAATGTTGTTGCTCACGGCTACACCAAGGGTGAT
GGTCTTGGTGCTGAGATTATTGGAACCTTTGTTCTTGTTTACACTGTCTT
CTCTGCCACTGATGCCAAGAGAAACGCCAGAGATTCTCATGTCCCCTATT
TGG
back to top