FC920318

Overview
NameFC920318
Unique NameFC920318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_KOSOT (Elongation factor Tu OS=Kosmotoga olearia (strain TBF 19.5.1) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 65/189 (34.39%), Postives = 92/189 (48.68%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFV 669
            + K H+NI  IGH+D GK+T T  +                K  A      F     +DK   E+ RGITI++   ++ET K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  M+   NK+D       +   + + +EV   L K  +   EVP +
Sbjct:    8 RTKPHLNIGTIGHIDHGKTTLTAAIT---------------KALAYKGFADFTPFDAIDKAPEEKARGITINVTHVEYETEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGVMP-------QTREHVLLARQVNVPAMVVFINKVDMVD---DEELVELVEEEVRDLLSKYEFPGDEVPVI 171          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_DESVV (Elongation factor Tu OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 68/196 (34.69%), Postives = 95/196 (48.47%), Query Frame = 1
Query:   97 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFV 669
            MGKEK      H+NI  IGH+D GK+T T  +                K A  + +  F     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L   G+   +VP V
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KTAGLLGQGKFIAYDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPYIVVFLNKCDMVD---DEELLELVELEVRELLTSYGFPGDDVPVV 171          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_DESVH (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 68/196 (34.69%), Postives = 95/196 (48.47%), Query Frame = 1
Query:   97 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFV 669
            MGKEK      H+NI  IGH+D GK+T T  +                K A  + +  F     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L   G+   +VP V
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KTAGLLGQGKFIAYDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPYIVVFLNKCDMVD---DEELLELVELEVRELLTSYGFPGDDVPVV 171          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_BOVIN (Elongation factor Tu, mitochondrial OS=Bos taurus GN=TUFM PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 64/190 (33.68%), Postives = 92/190 (48.42%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPREVPFV 669
            ++K H+N+  IGHVD GK+T T  +                K  AE     FK    +D    ER RGITI+ A  ++ T   +    D PGH D++KNMITGT+  D  +L++ +  G          QTREH LLA  +GV+ ++   NK DA       +   E+V+ E+   L + GY   E P +
Sbjct:   53 RDKPHVNVGTIGHVDHGKTTLTAAIT---------------KILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-------QTREHLLLARQIGVEHVVVYVNKADAV----QDSEMVELVELEIRELLTEFGYKGEETPII 216          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTUB_NICSY (Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 60/189 (31.75%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFV 669
            ++K H+NI  IGHVD GK+T T  L   L  +     +++++               +D    ER RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++    G          QT+EH LLA  +GV  M+   NK D       +   + +  EV   L    +   E+P +
Sbjct:   84 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE---------------IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNMVVFLNKQDQVD---DEELLELVELEVRELLSSYEFPGDEIPII 247          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: CYSN_SULNB (Sulfate adenylyltransferase subunit 1 OS=Sulfurovum sp. (strain NBC37-1) GN=cysN PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 63/199 (31.66%), Postives = 102/199 (51.26%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSF-------KYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFVPIS 678
            + K  +  +  G VD GKST  G ++Y     D ++I   +  AAE   R +         A ++D L++ERE+GITID+A   F T K    + D PGH  + +NM+TG S AD A+++ID+  G          QTR H+ +   LG++ +I   NKMD     +S+  +D+I     +   ++G   +   ++P+S
Sbjct:   20 ENKDMLRFLTCGSVDDGKSTLIGRMLY-----DSKMIFDDQLSAAEGESRKYGTTGEKLDMALLVDGLQSEREQGITIDVAYRFFATEKRKFIIADTPGHEQYTRNMVTGASTADVAIILIDARKGILT-------QTRRHSFIVNLLGIEHVIVAINKMDLV--DFSEEVFDKISGAYGALADELGI--KNTYYIPVS 202          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: CYSN_METPB (Sulfate adenylyltransferase subunit 1 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=cysN PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 62/194 (31.96%), Postives = 102/194 (52.58%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFVPIS 678
            + K  +  +  G VD GKST  G L++    I    +   ++++ +   +  +   A ++D L+AERE+GITID+A   F T +    V D PGH  + +NM TG S AD AV+++D+  G          QTR HALL   LG+ ++    NKMD     +S+ ++D I+    ++   + ++  EV  +P+S
Sbjct:   20 QSKEVLRFITCGSVDDGKSTLIGRLLHDTKQIFDDQVTALQRDSRKHGTQGAEVDLALLVDGLQAEREQGITIDVAYRFFSTDRRSFIVADTPGHEQYTRNMATGASTADVAVILVDARHG-------LTRQTRRHALLVSLLGIHRVALAINKMDLV--GWSQDKFDAILSGFQAFAAPLNFS--EVRAIPLS 202          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: CYSN_METC4 (Sulfate adenylyltransferase subunit 1 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=cysN PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 61/194 (31.44%), Postives = 103/194 (53.09%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFK--YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFVPIS 678
            + K  +  +  G VD GKST  G L++    I    +   ++++ +   +  +  +A ++D L+AERE+GITID+A   F T +    V D PGH  + +NM TG S AD AV+++D+  G          Q+R HALL   LG++++    NKMD     +S+ +++ IV    ++   + +   EV  +P+S
Sbjct:   20 QNKEVLRFITCGSVDDGKSTLIGRLLHDTKQIFDDQVTALQRDSRKHGTQGGEVDFALLVDGLQAEREQGITIDVAYRFFSTDRRSFIVADTPGHEQYTRNMATGASTADLAVILVDARHG-------LTRQSRRHALLVSLLGIRRVALAINKMDLV--GWSQDKFEAIVSGFQAFAAPLNFT--EVRAIPLS 202          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_THESQ (Elongation factor Tu OS=Thermotoga sp. (strain RQ2) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 66/189 (34.92%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFV 669
            + K H+N+  IGH+D GKST T  +   L          +++               +DK   E+ RGITI+I   +++T K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D           D +  EV   L + GY   EVP +
Sbjct:    8 RTKPHVNVGTIGHIDHGKSTLTAAITKYLSLKGLAQYVPYDQ---------------IDKAPEEKARGITINITHVEYQTEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVEVPYMIVFINKTDMVD---DPELIDLVEMEVRDLLSQYGYPGDEVPVI 171          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_THEP1 (Elongation factor Tu OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 66/189 (34.92%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFV 669
            + K H+N+  IGH+D GKST T  +   L          +++               +DK   E+ RGITI+I   +++T K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D           D +  EV   L + GY   EVP +
Sbjct:    8 RTKPHVNVGTIGHIDHGKSTLTAAITKYLSLKGLAQYVPYDQ---------------IDKAPEEKARGITINITHVEYQTEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVEVPYMIVFINKTDMVD---DPELIDLVEMEVRDLLSQYGYPGDEVPVI 171          
The following BLAST results are available for this feature:
BLAST of FC920318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_KOSOT1.922e-2034.39Elongation factor Tu OS=Kosmotoga olearia (strain ... [more]
EFTU_DESVV1.922e-2034.69Elongation factor Tu OS=Desulfovibrio vulgaris sub... [more]
EFTU_DESVH1.922e-2034.69Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_BOVIN1.922e-2033.68Elongation factor Tu, mitochondrial OS=Bos taurus ... [more]
EFTUB_NICSY1.922e-2031.75Elongation factor TuB, chloroplastic OS=Nicotiana ... [more]
CYSN_SULNB1.922e-2031.66Sulfate adenylyltransferase subunit 1 OS=Sulfurovu... [more]
CYSN_METPB1.922e-2031.96Sulfate adenylyltransferase subunit 1 OS=Methyloba... [more]
CYSN_METC41.922e-2031.44Sulfate adenylyltransferase subunit 1 OS=Methyloba... [more]
EFTU_THESQ2.510e-2034.92Elongation factor Tu OS=Thermotoga sp. (strain RQ2... [more]
EFTU_THEP12.510e-2034.92Elongation factor Tu OS=Thermotoga petrophila (str... [more]

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Properties
Property NameValue
Genbank descriptionC32006G08EF RVDevelop1 Citrus clementina cDNA clone C32006G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920318 ID=FC920318; Name=FC920318; organism=Citrus clementina; type=EST; length=686bp
GCTCTTTTCAATACACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACC
ATTTTCGCGAATATCATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGG
GTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCT
GGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGA
CAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGA
GGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAA
CGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTA
CTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACA
TGATTACCGGTACCTCACAGGCTGACTGTGCTGTCCTCATCATTGACTCT
ACCACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGA
GCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCT
GTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAGGCTAGGTACGAT
GAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCC
CCGAGAAGTCCCATTCGTGCCCATCTCTGGTTTCGA
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