FC920320

Overview
NameFC920320
Unique NameFC920320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15512 contig Ccv1_Contig15512:5..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920320 vs. ExPASy Swiss-Prot
Match: DNAK_NEIMF (Chaperone protein dnaK OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 68/140 (48.57%), Postives = 93/140 (66.43%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +  VIGIDLGTT SC+ + +NG  ++I N +G R TPS +A+ D  E L+G  AK QA  N   TI+  KRLIG KFEDKEVQRD++  P++I+   +G  +++ Q      K  SP +ISA +L KMKE AEA+LG+K+
Sbjct:    1 MAKVIGIDLGTTNSCLAISENGQTKVIENAEGARTTPSVIAYLDGGEILVGAPAKRQAVTNAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAWVKAQ-----GKELSPPQISAEVLRKMKEAAEAYLGEKV 135
[Close]
BLAST of FC920320 vs. ExPASy Swiss-Prot
Match: DNAK_NEIMB (Chaperone protein dnaK OS=Neisseria meningitidis serogroup B GN=dnaK PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 68/140 (48.57%), Postives = 93/140 (66.43%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +  VIGIDLGTT SC+ + +NG  ++I N +G R TPS +A+ D  E L+G  AK QA  N   TI+  KRLIG KFEDKEVQRD++  P++I+   +G  +++ Q      K  SP +ISA +L KMKE AEA+LG+K+
Sbjct:    1 MAKVIGIDLGTTNSCLAISENGQTKVIENAEGARTTPSVIAYLDGGEILVGAPAKRQAVTNAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAWVKAQ-----GKELSPPQISAEVLRKMKEAAEAYLGEKV 135
[Close]
BLAST of FC920320 vs. ExPASy Swiss-Prot
Match: DNAK_NEIMA (Chaperone protein dnaK OS=Neisseria meningitidis serogroup A GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 68/140 (48.57%), Postives = 93/140 (66.43%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +  VIGIDLGTT SC+ + +NG  ++I N +G R TPS +A+ D  E L+G  AK QA  N   TI+  KRLIG KFEDKEVQRD++  P++I+   +G  +++ Q      K  SP +ISA +L KMKE AEA+LG+K+
Sbjct:    1 MAKVIGIDLGTTNSCLAISENGQTKVIENAEGARTTPSVIAYLDGGEILVGAPAKRQAVTNAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAWVKAQ-----GKELSPPQISAEVLRKMKEAAEAYLGEKV 135
[Close]
BLAST of FC920320 vs. ExPASy Swiss-Prot
Match: DNAK_NEIM0 (Chaperone protein dnaK OS=Neisseria meningitidis serogroup C (strain 053442) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 68/140 (48.57%), Postives = 93/140 (66.43%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +  VIGIDLGTT SC+ + +NG  ++I N +G R TPS +A+ D  E L+G  AK QA  N   TI+  KRLIG KFEDKEVQRD++  P++I+   +G  +++ Q      K  SP +ISA +L KMKE AEA+LG+K+
Sbjct:    1 MAKVIGIDLGTTNSCLAISENGQTKVIENAEGARTTPSVIAYLDGGEILVGAPAKRQAVTNAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAWVKAQ-----GKELSPPQISAEVLRKMKEAAEAYLGEKV 135
[Close]
BLAST of FC920320 vs. ExPASy Swiss-Prot
Match: DNAK_ECOUT (Chaperone protein dnaK OS=Escherichia coli (strain UTI89 / UPEC) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPV 135
[Close]
BLAST of FC920320 vs. ExPASy Swiss-Prot
Match: DNAK_ECOLI (Chaperone protein dnaK OS=Escherichia coli (strain K12) GN=dnaK PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPV 135
[Close]
BLAST of FC920320 vs. ExPASy Swiss-Prot
Match: DNAK_ECOLC (Chaperone protein dnaK OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPV 135
[Close]
BLAST of FC920320 vs. ExPASy Swiss-Prot
Match: DNAK_ECOL6 (Chaperone protein dnaK OS=Escherichia coli O6 GN=dnaK PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPV 135
[Close]
BLAST of FC920320 vs. ExPASy Swiss-Prot
Match: DNAK_ECOL5 (Chaperone protein dnaK OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPV 135
[Close]
BLAST of FC920320 vs. ExPASy Swiss-Prot
Match: DNAK_ECOK1 (Chaperone protein dnaK OS=Escherichia coli O1:K1 / APEC GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPV 135
The following BLAST results are available for this feature:
BLAST of FC920320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_NEIMF7.667e-2948.57Chaperone protein dnaK OS=Neisseria meningitidis s... [more]
DNAK_NEIMB7.667e-2948.57Chaperone protein dnaK OS=Neisseria meningitidis s... [more]
DNAK_NEIMA7.667e-2948.57Chaperone protein dnaK OS=Neisseria meningitidis s... [more]
DNAK_NEIM07.667e-2948.57Chaperone protein dnaK OS=Neisseria meningitidis s... [more]
DNAK_ECOUT7.667e-2945.71Chaperone protein dnaK OS=Escherichia coli (strain... [more]
DNAK_ECOLI7.667e-2945.71Chaperone protein dnaK OS=Escherichia coli (strain... [more]
DNAK_ECOLC7.667e-2945.71Chaperone protein dnaK OS=Escherichia coli (strain... [more]
DNAK_ECOL67.667e-2945.71Chaperone protein dnaK OS=Escherichia coli O6 GN=d... [more]
DNAK_ECOL57.667e-2945.71Chaperone protein dnaK OS=Escherichia coli O6:K15:... [more]
DNAK_ECOK17.667e-2945.71Chaperone protein dnaK OS=Escherichia coli O1:K1 /... [more]

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Properties
Property NameValue
Genbank descriptionC32006G10EF RVDevelop1 Citrus clementina cDNA clone C32006G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920320 ID=FC920320; Name=FC920320; organism=Citrus clementina; type=EST; length=643bp
GGAAACCAGAAGGCCTTTCGAAAGCAAAAAAACACACTTCAAACATCGAA
ACCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTA
TAATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCC
CTCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAAT
TGCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTG
GTACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATC
ATAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCAC
TGACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCA
ATCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTT
GAGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGT
GAATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGACGGCGAGA
CCAAGGTCTTCAGTCCTGAGGAAATCAGTGCTATGATACTGACTAAGATG
AAGGAGACAGCCGAGGCATTCCTTGGGAAGAAAATTAGGATGC
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