FC920323

Overview
NameFC920323
Unique NameFC920323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14439 contig Ccv1_Contig14439:34..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920323 vs. ExPASy Swiss-Prot
Match: SAP10_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Oryza sativa subsp. japonica GN=SAP10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.010e-15
Identity = 46/146 (31.51%), Postives = 69/146 (47.26%), Query Frame = 2
Query:  218 GPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDQHNCPFDYRTAARDAIIK 655
            G  +C   CGFFGS AT  +CSKCYK    +Q Q +    +     ++TS    ++       D      E   +   P+  ++             +RC +C+K+VGL GF CRCG ++C +H       C FDY+ A R+AI +
Sbjct:   14 GAAMCAAGCGFFGSAATDGLCSKCYKQ---QQPQPRHLIGTAAGDSDKTSLKVVADLSTLVIKDNSGVGGEGTTVMAPPATVTKAK-----------NRCKACRKKVGLLGFPCRCGGMFCGAHA------CAFDYKAAGREAIAR 139          
BLAST of FC920323 vs. ExPASy Swiss-Prot
Match: SAP14_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 14 OS=Oryza sativa subsp. japonica GN=SAP14 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  461 ASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDQHNCPFDYRTAARDAIIK 655
            AS  S S     +   +RC++C+++VGLTGFKCRCG  +C  HRY+D+H C FDY+++ R+ I K
Sbjct:  159 ASYSSSSPATGEQPEANRCATCRRKVGLTGFKCRCGGTFCGGHRYADEHGCGFDYKSSGRELIAK 223          
BLAST of FC920323 vs. ExPASy Swiss-Prot
Match: SAP15_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 15 OS=Oryza sativa subsp. japonica GN=SAP15 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 2
Query:  509 SRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDQHNCPFDYRTAARDAIIK 655
            +RC+ C+KRVGLTGF+CRCG L+C  HR+S+ H C FDY+TA R+ I +
Sbjct:  113 NRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIAR 161          
BLAST of FC920323 vs. ExPASy Swiss-Prot
Match: ZFAN3_RAT (AN1-type zinc finger protein 3 OS=Rattus norvegicus GN=Zfand3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 53/197 (26.90%), Postives = 77/197 (39.09%), Query Frame = 2
Query:  209 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQPS----------------------CASELSESVEAKPKEGPS--------------------RCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDQHNCPFDYRTAARDAII 652
            PP  P      CGF+GS  TMN+CSKC+ D   KQ       S+  S       ET+S N + SV   T+     S+  ++    PS                      C ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  +QH+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNSQSDLFSEETTSDNNNTSVTTPTLSPSQQSLPTELNVTSPSEEECGPCTDTAHVSLITPTKRSCGADSQSESEASPVKRPRLVENPERPEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of FC920323 vs. ExPASy Swiss-Prot
Match: ZFAN3_MOUSE (AN1-type zinc finger protein 3 OS=Mus musculus GN=Zfand3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 53/197 (26.90%), Postives = 77/197 (39.09%), Query Frame = 2
Query:  209 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQPS----------------------CASELSESVEAKPKEGPS--------------------RCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDQHNCPFDYRTAARDAII 652
            PP  P      CGF+GS  TMN+CSKC+ D   KQ       S+  S       ET+S N + SV   T+     S+  ++    PS                      C ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  +QH+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNSQSDLFSEETTSDNNNTSVTTPTLSPSQQSLPTELNVTSPSTEECGPCTDTAHVSLITPTKRSCGADSQSENEASPVKRPRLVENPERPEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of FC920323 vs. ExPASy Swiss-Prot
Match: ZFAN3_HUMAN (AN1-type zinc finger protein 3 OS=Homo sapiens GN=ZFAND3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.365e-12
Identity = 52/197 (26.40%), Postives = 77/197 (39.09%), Query Frame = 2
Query:  209 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQP----------------------SCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDQHNCPFDYRTAARDAII 652
            PP  P      CGF+GS  TMN+CSKC+ D   KQ     A S+  S       ET+S N + S+   T+      +  ++    P                      SC ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  +QH+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLFSEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGTDSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of FC920323 vs. ExPASy Swiss-Prot
Match: ZFAN3_XENLA (AN1-type zinc finger protein 3 homolog OS=Xenopus laevis GN=zfand3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 55/196 (28.06%), Postives = 79/196 (40.31%), Query Frame = 2
Query:  209 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVD-VQASSVEPKIIS--------------------VQPSCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSDQHNCPFDYRTAARDAII 652
            PP  P      CGF+GS  TMN+CSKC+ D   KQ     A S+  S      +ET S NG+ S+   TV+  Q    E  + S                     + SC S+     +  P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  +QH+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDEDTAPSTSSSQSDLFPSETDSDNGNTSIPTPTVNPTQQLPTELNVDSPSKEDCGPCTDSAHVSLTTPSKRSCDSDSQSEDDTSPMKRPRLLDSGDRPDNSSRSKQKSRRRCFRCQIKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 204          
The following BLAST results are available for this feature:
BLAST of FC920323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SAP10_ORYSJ1.010e-1531.51Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP14_ORYSJ7.240e-1447.69Zinc finger AN1 domain-containing stress-associate... [more]
SAP15_ORYSJ1.235e-1359.18Zinc finger AN1 domain-containing stress-associate... [more]
ZFAN3_RAT6.129e-1326.90AN1-type zinc finger protein 3 OS=Rattus norvegicu... [more]
ZFAN3_MOUSE8.005e-1326.90AN1-type zinc finger protein 3 OS=Mus musculus GN=... [more]
ZFAN3_HUMAN1.365e-1226.40AN1-type zinc finger protein 3 OS=Homo sapiens GN=... [more]
ZFAN3_XENLA3.042e-1228.06AN1-type zinc finger protein 3 homolog OS=Xenopus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006H02EF RVDevelop1 Citrus clementina cDNA clone C32006H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920323 ID=FC920323; Name=FC920323; organism=Citrus clementina; type=EST; length=655bp
CGGGGGACACCCGGAAAGGGAAACGACGACGTCTCTAATCGGTTTTTGCC
TGCTCTCTCCCCGTAGGCCGATCTGGTCCATTTAATTTTAGGGGCTCATT
GGATGCTGGCTTGAGCTCGGGGATCGGCTTAAGGGATTCATTGCTGTTTC
TTCTGTTGCTCGCAGGGGTGGTGAAAACATGGACCATGATGAGACTGGAT
GCCAAGCTCCTCCTGAGGGCCCTATCTTGTGCATCAACAATTGTGGTTTC
TTTGGAAGTGTGGCTACTATGAATATGTGTTCCAAATGCTACAAGGATAT
AATGCTGAAACAGGATCAAGCTAAGCTTGCTGCTTCATCTATTGGAAGCA
TTGTGAATGAAACGTCAAGCAGCAATGGAAGTGAATCTGTTGCTGCTGCC
ACTGTTGATGTGCAAGCTAGTTCAGTGGAGCCAAAAATCATCTCTGTGCA
GCCATCATGTGCTTCAGAATTGAGCGAGAGTGTGGAGGCAAAGCCGAAGG
AGGGTCCCAGCCGGTGCAGCAGTTGCAAGAAGCGTGTTGGTTTAACAGGA
TTCAAATGTCGCTGTGGTAACTTATACTGTGTGTCACATCGCTATTCGGA
CCAACATAACTGCCCCTTTGACTACCGCACTGCTGCTAGGGATGCTATAA
TTAAA
back to top