FC920324

Overview
NameFC920324
Unique NameFC920324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_ANTMA (Dihydroflavonol-4-reductase OS=Antirrhinum majus GN=DFRA PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 5.899e-14
Identity = 28/84 (33.33%), Postives = 46/84 (54.76%), Query Frame = 3
Query:  141 GDERETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALGVKR 389
            G+ ++  HL  L  ADT L L++            + GC GVFHLA+    D V DP+N+++ P + G +N++ +  +A  VK+
Sbjct:   52 GNMKKVKHLIELPKADTNLTLWKADMTVEGSFDEAIQGCEGVFHLATSMEFDSV-DPENEVIKPTIDGMLNIIKSCVQAKTVKK 134          

HSP 2 Score: 46.595 bits (109), Expect = 5.899e-14
Identity = 23/38 (60.53%), Postives = 25/38 (65.79%), Query Frame = 2
Query:   17 EKMSKEAEVVCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            E     +  VCVTG +G IGSWLV  LLER YTV ATV
Sbjct:   11 ETAPPSSTTVCVTGAAGFIGSWLVMRLLERGYTVRATV 48          
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_CALCH (Dihydroflavonol-4-reductase OS=Callistephus chinensis GN=F PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.001e-13
Identity = 27/84 (32.14%), Postives = 49/84 (58.33%), Query Frame = 3
Query:  141 GDERETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALGVKR 389
            GD ++  HL  L  A+T L L++            + GC GVFH+A+P   +  +DP+N+++ P ++G ++++ + AKA  VK+
Sbjct:   41 GDMKKVKHLLELPKAETNLTLWKADLTQEGSFDEAIEGCHGVFHVATPMDFES-KDPENEIIKPTIEGILSIIRSCAKAKTVKK 123          

HSP 2 Score: 43.8986 bits (102), Expect = 1.001e-13
Identity = 21/29 (72.41%), Postives = 22/29 (75.86%), Query Frame = 2
Query:   44 VCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            VCVTG +G IGSWLV  LLER Y V ATV
Sbjct:    9 VCVTGAAGFIGSWLVMRLLERGYIVRATV 37          
The following BLAST results are available for this feature:
BLAST of FC920324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DFRA_ANTMA5.899e-1433.33Dihydroflavonol-4-reductase OS=Antirrhinum majus G... [more]
DFRA_CALCH1.001e-1332.14Dihydroflavonol-4-reductase OS=Callistephus chinen... [more]

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Properties
Property NameValue
Genbank descriptionC32006H05EF RVDevelop1 Citrus clementina cDNA clone C32006H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920324 ID=FC920324; Name=FC920324; organism=Citrus clementina; type=EST; length=668bp
ACAGCGGATACCGATAGAGAAAATGTCCAAAGAAGCTGAGGTGGTTTGCG
TCACCGGCGGCAGCGGCTGCATCGGCTCCTGGCTGGTCCGTCTCCTTCTC
GAACGCCGCTACACTGTTCACGCCACTGTCAAAAATCTCAGGTGATGAAA
GAGAAACAGCTCATCTCAAAGCGCTAGAAGGAGCTGACACGCGTCTCCGT
CTCTTCCAAATCGACCTCCTCGATTACGACGCCATCGCCGCCGCGGTCAC
CGGCTGTACTGGTGTCTTCCACTTGGCCTCACCTTGCATTGTCGACAAAG
TCGAAGATCCTCAGAACCAGCTTTTGAATCCCGCGGTTAAAGGAACCGTT
AACGTACTCACCGCAGCTAAGGCACTGGGAGTGAAGCGCGTGGTCGTAAC
GTCATCGATTTCCTCTATAACTCCTAGCCCGAAGTGGCCCGCTGATAAAG
TCAAAGATGAGGATTGCTGGACCGATGAAGAGTACTGCAGGCAAAATGAA
GTAAGTAGCTGCAGTCTGCAGTCTGCAGGCAAAATGAAGTAACACTGACT
TTAAACAAGAACTCGTGAATTGTAATTGCTGAACGGTGAATTTCAGGATT
ATTAATTTTTGCTTAATTAATTTTTGAGGGTTTTGAGTTGCTAATAGATC
GAAATTCTGAGCAAGTTT
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