FC920328

Overview
NameFC920328
Unique NameFC920328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14121 contig Ccv1_Contig14121:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAAM (Pyruvate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pyk PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EMI KL  AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRK 52
[Close]
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAAC (Pyruvate kinase OS=Staphylococcus aureus (strain COL) GN=pyk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EMI KL  AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRK 52
[Close]
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAAB (Pyruvate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=pyk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EMI KL  AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRK 52
[Close]
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAA8 (Pyruvate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=pyk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EMI KL  AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRK 52
[Close]
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAA3 (Pyruvate kinase OS=Staphylococcus aureus (strain USA300) GN=pyk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EMI KL  AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRK 52
[Close]
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_BACPY (Pyruvate kinase OS=Bacillus psychrophilus GN=pyk PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + E++ +L EAGMNVARLN SHG+HA H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESPELLEQLIEAGMNVARLNFSHGNHAEHKARIDSIRK 52
[Close]
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAES (Pyruvate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pyk PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EM+ KL  AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMLEKLMNAGMNVARLNFSHGSHEEHKARIDTIRK 52
[Close]
BLAST of FC920328 vs. ExPASy Swiss-Prot
Match: KPYK_STAEQ (Pyruvate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pyk PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:  540 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKXIDLVKE 692
            RKTKIVCTIGP++ + EM+ KL  AGMNVARLN SHG H  H+  ID +++
Sbjct:    2 RKTKIVCTIGPASESEEMLEKLMNAGMNVARLNFSHGSHEEHKARIDTIRK 52
The following BLAST results are available for this feature:
BLAST of FC920328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
KPYK_STAAM1.006e-1162.75Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAC1.006e-1162.75Pyruvate kinase OS=Staphylococcus aureus (strain C... [more]
KPYK_STAAB1.006e-1162.75Pyruvate kinase OS=Staphylococcus aureus (strain b... [more]
KPYK_STAA81.006e-1162.75Pyruvate kinase OS=Staphylococcus aureus (strain N... [more]
KPYK_STAA31.006e-1162.75Pyruvate kinase OS=Staphylococcus aureus (strain U... [more]
KPYK_BACPY1.006e-1160.78Pyruvate kinase OS=Bacillus psychrophilus GN=pyk P... [more]
KPYK_STAES1.314e-1160.78Pyruvate kinase OS=Staphylococcus epidermidis (str... [more]
KPYK_STAEQ1.314e-1160.78Pyruvate kinase OS=Staphylococcus epidermidis (str... [more]

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Properties
Property NameValue
Genbank descriptionC32006H09EF RVDevelop1 Citrus clementina cDNA clone C32006H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920328 ID=FC920328; Name=FC920328; organism=Citrus clementina; type=EST; length=706bp
CTTGGCCGGGGATACGAACTAAGCGCCTCTTTCTCTTTCTCTCGCCTACC
TTGTCCCTCCCTCTACCCGTCCGCCAAATTTAGCGGCGATTTCTCCAAAC
TCTGAATCAAAATTAAAACTATTACACACTCTCTCTCACTTCAAATCCTC
AAATCAGAACTCTCCGTTCACATTCTCTCTCAGCAATTCATTTTTCATTT
TGCTTTTCTTCTCTAGCAATGGCTCAGGTAGTGGCTACACGATCGATTCA
GAGTTCGTTTATGTGTCCTGCCTCGGGATCCGCGCAAGAGCGGGCTAGCG
AGAAGCTAAAGCCTTCTAGCTTCGCTTCGACCGTGCTGTCACGTGAGGAG
AAGAAGAGAGTTACACTTGTTCGCAAAAGCACTAAAATCTCTGCTCAGAA
AGCCACACGTGTCGAACCTGAGGTTGTCCCTGTGTCTCCTGAGGACGTAC
CTAAGAGAGATGGGGAATTTCAGCATTTTGGGGGACTTCAGCAATTAGGT
GACACATCAGTGAGCATGTGGACCAAGCCAACTGTTAGACGCAAGACCAA
GATTGTGTGCACCATTGGTCCTTCGACTAACACAAGGGAAATGATATGGA
AGCTGGCCGAGGCTGGAATGAATGTTGCTCGTTTGAACATGTCCCATGGA
GACCACGCTTCTCATCAAAAAGNTATTGATTTGGTTAAAGAATATAATGC
ACAATC
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