FC920329 | Citrus Genome Database

Overview


Name	FC920329
Unique Name	FC920329
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	563

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10338	contig	Ccv1_Contig10338:68..630.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of FC920329 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.929e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 147.902 bits (372), Expect = 3.195e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLGDGRTLADYNIQKESTLHLVLRLRGG 228
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of FC920329 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.929e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 147.902 bits (372), Expect = 3.195e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLGDGRTLADYNIQKESTLHLVLRLRGG 228
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of FC920329 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.929e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 147.902 bits (372), Expect = 3.195e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLGDGRTLADYNIQKESTLHLVLRLRGG 228
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of FC920329 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.929e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 147.902 bits (372), Expect = 3.195e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLGDGRTLADYNIQKESTLHLVLRLRGG 228
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of FC920329 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.929e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 147.902 bits (372), Expect = 3.195e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLGDGRTLADYNIQKESTLHLVLRLRGG 228
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of FC920329 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.929e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 147.902 bits (372), Expect = 3.195e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLGDGRTLADYNIQKESTLHLVLRLRGG 228
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of FC920329 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.929e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 147.902 bits (372), Expect = 3.195e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLGDGRTLADYNIQKESTLHLVLRLRGG 228
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of FC920329 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.929e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 147.902 bits (372), Expect = 3.195e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLGDGRTLADYNIQKESTLHLVLRLRGG 228
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of FC920329 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.929e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 147.902 bits (372), Expect = 3.195e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLGDGRTLADYNIQKESTLHLVLRLRGG 228
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of FC920329 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.929e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 147.902 bits (372), Expect = 3.195e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1

Query:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLGDGRTLADYNIQKESTLHLVLRLRGG 228
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of FC920329 vs. ExPASy Swiss-Prot

BLAST of FC920329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
UBIQ_LUPAL	4.929e-36	100.00	Ubiquitin OS=Lupinus albus PE=3 SV=1	[more]
UBIQ_LINUS	4.929e-36	100.00	Ubiquitin OS=Linum usitatissimum PE=3 SV=1	[more]
UBIQ_HORVU	4.929e-36	100.00	Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1	[more]
UBIQ_HELAN	4.929e-36	100.00	Ubiquitin OS=Helianthus annuus PE=3 SV=1	[more]
UBIQ_DESAN	4.929e-36	100.00	Ubiquitin OS=Deschampsia antarctica PE=2 SV=1	[more]
UBIQ_DAUCA	4.929e-36	100.00	Ubiquitin OS=Daucus carota PE=3 SV=1	[more]
UBIQ_BRARA	4.929e-36	100.00	Ubiquitin OS=Brassica rapa PE=3 SV=1	[more]
UBIQ_AVESA	4.929e-36	100.00	Ubiquitin OS=Avena sativa PE=1 SV=1	[more]
UBIQ_AVEFA	4.929e-36	100.00	Ubiquitin OS=Avena fatua PE=3 SV=1	[more]
UBIQ_ASPOF	4.929e-36	100.00	Ubiquitin OS=Asparagus officinalis PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C32006H10EF RVDevelop1 Citrus clementina cDNA clone C32006H10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920329 ID=FC920329; Name=FC920329; organism=Citrus clementina; type=EST; length=563bp
ATGCAAATCTTTGTGAAAACTCTCACCGGCAAGACAATAACCCTTGAGGT
TGAAAGCTCCGACACCATTGATAATGTAAAAGCCAAGATCCAGGACAAGG
AAGGGATCCCACCAGATCAGCAGAGGCTTATCTTTGCTGGTAAACAGCTC
GGGGATGGTCGCACACTCGCTGACTATAATATCCAGAAGGAATCAACCCT
CCACTTGGTCCTTCGACTTAGGGGTGGTATGCAGATCTTTGTAAAGACCC
TCACTGGCAAGACGATTACTCTTGAGGTGGAAAGCTCCGACACCATTGAC
AATGTGAAAGCCAAGATTCAAGACAAGGAAGGGATCCCACCAGACCAACA
GAGGCTTATCTTTGCCGGTAAACAGCTCGAGGATGGTCGCACACTTGCTG
ATTATAACATCCAGAAGGAGTCAACCCTCCACTTGGTCCTCCGTCTCCGT
GGTGGTATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACTATCACCCT
TGAGGTGGAAAGCTCCGACACCATTGACAAATGTCAAGCCAAAATTCAGG
ATAAGGAAGGGAT