FC920332

Overview
NameFC920332
Unique NameFC920332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_AERPE (Translation initiation factor 6 OS=Aeropyrum pernix GN=eif6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 48/148 (32.43%), Postives = 79/148 (53.38%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIG-GSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGS 646
            +L    +  +GV+   +++Y L     G++   +  E     +  VV+  + G R++G L  GN  G+LLP    D+E++ +R +L + V V  +  R +ALGN I CND   L    L++E  + ++D LGVEV   ++AG   VGS
Sbjct:   11 KLSLYGNPNIGVYLTASDSYVLAPDDIGADDVRTISEVLGVAMERVVRLRVLGMRLVGVLTTGNSRGILLPEGV-DREVELVRKAL-EGVEVGIVPTRSNALGNVIVCNDRACLASPGLEKEALKTVSDTLGVEVVEGSVAGVYTVGS 156          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_METST (Translation initiation factor 6 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 48/150 (32.00%), Postives = 78/150 (52.00%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGS 646
            M  +   + +  +GV     +   +V+ G  +S+  + +  L    P++KT I G+ + G L AGN NGLL+       EL  LR      + V+ + ++L+A+GN I  ND+ AL +  L  E + +I + L VEV   +IAG  +VGS
Sbjct:    1 MIQKFDIDGNPNLGVSILAKDNVAIVSPGLQDSYLKSIKETLN--VPIIKTPICGSNLAGALMAGNSNGLLISPYVFSHELDVLREH---DINVEIMPDKLTAIGNIIVANDNGALVNPSLSDEAKRIIKNTLEVEVVETSIAGLDIVGS 145          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELA-DVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGS 646
            +GV+    + + L+     E         L+ D F V   S+ GTR++G   AGN NGL++P    D EL+HL++ L   +VV   + R + +GN +  ND+  +    L +   + IAD LGVE  + +I     VGS
Sbjct:   15 IGVYIFANDRFALIPYDAPEKLDRKIAENLSVDAFRV---SVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGS 149          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_METBU (Translation initiation factor 6 OS=Methanococcoides burtonii (strain DSM 6242) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVG 643
            +GVF+  T    +V IG +        AE  DV  V+ T I G+ ++G L  GN NG L+       +L+ +      +V V+ + + L+A+GN I  ND  AL H ++   + E+I+ VLGV+V R TIAG   VG
Sbjct:   13 LGVFATCTEDVAIVPIGTAGKAIDLL-AEQLDV-KVISTLINGSIVVGSLSKGNSNGFLISRDANVSDLKDV------EVPVEVLPDMLTAVGNVILANDTAALVHPEMTDSSIEVISRVLGVDVHRGTIAGLGTVG 141          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_HYPBU (Translation initiation factor 6 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eif6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 50/139 (35.97%), Postives = 73/139 (52.52%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVE-VFRQTIAGYILVGS 646
            +GV+    N   LV    +E      E  L     V++T I    I G + AGN NGLLLP     +EL +LR  + D+V ++ +E R +ALGN IA N+  AL    +D+   + I  VLGVE ++++ +A    VGS
Sbjct:   13 IGVYIYANNKIALVPPTLTEKDKKKIEETLG--VEVIETKIADMIINGVMIAGNDNGLLLPRIVKPEELDYLREHIGDKVRLEILEVRQTALGNLIAANNRGALVSPLIDKAILDKIKSVLGVETIYQRHLANIPTVGS 149          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_METPE (Translation initiation factor 6 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=eif6 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 45/149 (30.20%), Postives = 73/149 (48.99%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVG 643
            M   L +E    +G+F+++     +V    S  + +  +  L     +VKT + G+ IIG L +GN  G ++       E++    ++ +   V  +E  ++A GN I  ND +A  H D+D  T E I  VLGV V R T++G   VG
Sbjct:    1 MIRTLAYEGDPHIGIFTRVLEDIAVVPPEASADYCAALKEALG--VTLVKTHVQGSSIIGSLVSGNSRGAIVSGLAYPDEIR----AIEEYREVMLLEGSMNAAGNVILANDQMAAVHPDMDNATIEQIHSVLGVPVIRLTLSGIKTVG 143          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_METBF (Translation initiation factor 6 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=eif6 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 48/137 (35.04%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVG 643
            +GVF+  T    LV  G      +  E  L     +V+T + G+ +IG L  GN NG L  + T   E++ L       V  + +  +L+A+GN +  ND  AL H +L  +  E+IA  L VEV+R TIAG   VG
Sbjct:   13 IGVFATCTEDVVLVPTGTKPETCAILEDSLDA--RIVETLVNGSVVIGALSRGNSNGFLYSYGTDAGEMKELTG-----VEAEILPGKLNAVGNIVLANDSAALVHPELSDKAIEVIASTLKVEVYRGTIAGIKNVG 142          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_METTH (Translation initiation factor 6 OS=Methanobacterium thermoautotrophicum GN=eif6 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 47/150 (31.33%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGS 646
            M  R+    +  +GV+  +T++  L+     E F       L     V+K SI G+ + G L  GN NG ++ +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+    L  +  ++I DVL V+V   T+AG  +VGS
Sbjct:    1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGS 145          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12
Identity = 46/138 (33.33%), Postives = 70/138 (50.72%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGS 646
            +G +   +  Y +VA    +      + E  DV  VV+T++ G+ ++G L A N NG L P    + E++ +R      V V  +  +++A+GN +  NDH AL H DLD    E+I  VLG  V R  + G   VGS
Sbjct:   14 IGAWIAASEEYAVVAPKVPDDIVERVK-EALDV-EVVRTTVAGSNLVGALLAVNSNGALFPRHAREHEIRVVREL---GVEVDVLPSKMNAVGNLVLTNDHGALVHPDLDDHALEVIESVLGGRVVRGELGGVKTVGS 146          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_METAC (Translation initiation factor 6 OS=Methanosarcina acetivorans GN=eif6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVG 643
            +GVF+  T    LV         +  E E+ DV  V++T + G+ ++G L  GN NG +LP+     E+Q   +     + V  + +RL+A+GN +  ND  AL H DL  +  E IA  L V+V+R TIAG   VG
Sbjct:   13 IGVFATCTEDVVLVPPLTKPEVCALLE-EVLDV-RVIETLVNGSIVVGALSRGNSNGFMLPYGAR-AEMQRFTD-----IPVGILPDRLNAVGNIVFANDSAALVHPDLSDKALEAIARTLKVDVYRGTIAGIKNVG 141          
The following BLAST results are available for this feature:
BLAST of FC920332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
IF6_AERPE6.103e-1332.43Translation initiation factor 6 OS=Aeropyrum perni... [more]
IF6_METST1.041e-1232.00Translation initiation factor 6 OS=Methanosphaera ... [more]
IF6_THEPD1.360e-1232.37Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_METBU1.360e-1235.77Translation initiation factor 6 OS=Methanococcoide... [more]
IF6_HYPBU1.776e-1235.97Translation initiation factor 6 OS=Hyperthermus bu... [more]
IF6_METPE2.319e-1230.20Translation initiation factor 6 OS=Methanosphaerul... [more]
IF6_METBF3.029e-1235.04Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_METTH3.956e-1231.33Translation initiation factor 6 OS=Methanobacteriu... [more]
IF6_METKA6.748e-1233.33Translation initiation factor 6 OS=Methanopyrus ka... [more]
IF6_METAC1.503e-1135.77Translation initiation factor 6 OS=Methanosarcina ... [more]

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Properties
Property NameValue
Genbank descriptionC32007A01EF RVDevelop1 Citrus clementina cDNA clone C32007A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920332 ID=FC920332; Name=FC920332; organism=Citrus clementina; type=EST; length=660bp
GATAGAAAGTAGGAAGCAGAAACCCTCTTCTCATCTCATATTGGGTGGGG
TACTGGGGTTTGTTTCCGGCCGAAAGGGTAGCAAGTGAAGGGCCGCCTCA
TCATCATTATCATCAGCGCTTTGGCATTTCGAGTTTTCGACATCGTTTTC
CGTCATTTTGCTTTTTAATCAATTCAATTTCTGTCAATCTGTAATCATGG
CAACCAGGCTTATGTTTGAGAATTCATGTGAGGTTGGTGTGTTTTCCAAG
CTCACTAATGCTTATTGCTTGGTTGCAATAGGAGGTTCTGAAAGCTTCTA
CAGCACATTTGAGGCTGAGTTAGCAGATGTTTTTCCTGTTGTTAAAACAT
CTATTGGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAAT
GGGCTTCTCTTGCCGCACACTACCACAGACCAAGAACTTCAACACTTGAG
GAACAGCCTACCTGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTAT
CTGCCCTGGGCAACTGTATAGCATGCAACGACCATGTTGCTCTTACACAC
ACAGATCTTGACAGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGT
AGAAGTTTTTAGGCAGACAATTGCTGGNTATATCCTTGTTGGCAGTTACT
GTTCCTTCTC
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