FC920332

Overview
NameFC920332
Unique NameFC920332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_HALS3 (Translation initiation factor 6 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 43/147 (29.25%), Postives = 71/147 (48.30%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGS 646
            R  F  S  +GVF++ T +  LV     + F  +   EL    P V+T++GG+  +G L AGN +GLL+ +   ++E   +  +    V V  +   ++A GN +  ND  A  H+ L  +    + + L V   R  +AG   VG+
Sbjct:    3 RAAFRGSAYIGVFARATESCVLVRPDLDDDFVDSIADELG--VPAVQTTVGGSSTVGSLAAGNSSGLLVSNRIRERERDRIEAA---GVTVGELPGAVNAAGNVVVANDDGAYVHSGLSDDAVAAVEETLDVSATRGQLAGVDTVGT 144          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 47/143 (32.87%), Postives = 66/143 (46.15%), Query Frame = 2
Query:  215 FENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVG 643
            F     +GVF+++     ++     E F +     L     ++ T+I G+ IIG L AGN  GL++    TD+EL  L+        V  + E ++A GN I  ND  A  H DL  E  E I   LGVEV   T+ G    G
Sbjct:    7 FAGDPNIGVFARVAGNIAVIPPEAPEEFRNAIREGLG--VELLVTTIQGSAIIGSLVAGNSRGLVVSGLATDEELAVLKKHRK----VMLLCETMNAAGNVIMANDTFAAVHPDLPAEVAEEIGAFLGVEVIHLTLGGVRTTG 143          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 47/150 (31.33%), Postives = 74/150 (49.33%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGS 646
            M  ++   NS  +GV+++  N    + +  S+     FE  L     V K SIG + +IG + + N NG+++     D  + +L++   +   +  I  +L+A GN I  NDH AL H        + I DVLGVE  + +IAG   VGS
Sbjct:    1 MIKKVSILNSNFIGVYARTWNDVTFLPVNISDEEKRIFEETLKT--EVYKISIGNSFLIGSMLSMNSNGIVV----ADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGS 144          
The following BLAST results are available for this feature:
BLAST of FC920332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
IF6_HALS31.503e-1129.25Translation initiation factor 6 OS=Halobacterium s... [more]
IF6_METB61.963e-1132.87Translation initiation factor 6 OS=Methanoregula b... [more]
IF6_PICTO4.374e-1131.33Translation initiation factor 6 OS=Picrophilus tor... [more]

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Properties
Property NameValue
Genbank descriptionC32007A01EF RVDevelop1 Citrus clementina cDNA clone C32007A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920332 ID=FC920332; Name=FC920332; organism=Citrus clementina; type=EST; length=660bp
GATAGAAAGTAGGAAGCAGAAACCCTCTTCTCATCTCATATTGGGTGGGG
TACTGGGGTTTGTTTCCGGCCGAAAGGGTAGCAAGTGAAGGGCCGCCTCA
TCATCATTATCATCAGCGCTTTGGCATTTCGAGTTTTCGACATCGTTTTC
CGTCATTTTGCTTTTTAATCAATTCAATTTCTGTCAATCTGTAATCATGG
CAACCAGGCTTATGTTTGAGAATTCATGTGAGGTTGGTGTGTTTTCCAAG
CTCACTAATGCTTATTGCTTGGTTGCAATAGGAGGTTCTGAAAGCTTCTA
CAGCACATTTGAGGCTGAGTTAGCAGATGTTTTTCCTGTTGTTAAAACAT
CTATTGGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAAT
GGGCTTCTCTTGCCGCACACTACCACAGACCAAGAACTTCAACACTTGAG
GAACAGCCTACCTGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTAT
CTGCCCTGGGCAACTGTATAGCATGCAACGACCATGTTGCTCTTACACAC
ACAGATCTTGACAGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGT
AGAAGTTTTTAGGCAGACAATTGCTGGNTATATCCTTGTTGGCAGTTACT
GTTCCTTCTC
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