FC920333

Overview
NameFC920333
Unique NameFC920333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14122 contig Ccv1_Contig14122:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_SOLLC (Lactoylglutathione lyase OS=Solanum lycopersicum GN=GLX1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 46/146 (31.51%), Postives = 71/146 (48.63%), Query Frame = 3
Query:  159 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQS---------------YFVVELTYNYGV------TSYDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 521
            L   ++R+ D   ++++Y++  GM LL++ D PE K+S  F+G+    S                  +ELT+N+G       T Y  G     GFGH+ +  +DVYK  E   + G    ++  PL G     AF+KDPDGY  E+
Sbjct:   28 LQQTMFRIKDPKVSLEFYSKVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPSDPVERTAWTFSQKSTLELTHNWGTESDPNFTGYHNGNSEPRGFGHIGVTVDDVYKACERFESLGVEFVKK--PLDGKMKGIAFIKDPDGYWIEI 171          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_CICAR (Lactoylglutathione lyase OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 48/147 (32.65%), Postives = 71/147 (48.30%), Query Frame = 3
Query:  171 VYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGF-----GPEQ----------SYFVVELTYNYGVTS------YDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTREP--GPLKGMTTHFAFVKDPDGYIFELIQR 530
            ++R+ D   ++ +Y+   GM LL++ D PE K+S  F+G+      P                +ELT+N+G  S      Y  G     GFGH+ I  +D YK  E  +  G    ++P  G +KG+    AF+KDPDGY  EL  R
Sbjct:   33 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTTEAPSNPVDRTVWTFAQKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDTYKACERFQNLGVEFVKKPDDGKMKGI----AFIKDPDGYWIELFDR 175          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_SOYBN (Lactoylglutathione lyase OS=Glycine max GN=GLXI PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 46/147 (31.29%), Postives = 71/147 (48.30%), Query Frame = 3
Query:  171 VYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGF-----GPE----------QSYFVVELTYNYGVTS------YDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTREP--GPLKGMTTHFAFVKDPDGYIFELIQR 530
            ++R+ D   ++ +Y+   GM LL++ D PE K+S  F+G+      P                +ELT+N+G  S      Y  G     GFGH+ +  +D YK  E  +  G    ++P  G +KG+    AF+KDPDGY  E+  R
Sbjct:   32 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYENTAEAPSNPIDKVVWTFSQKATIELTHNWGTESDPEFKGYHNGNSEPRGFGHIGVTVDDTYKACERFQNLGVEFVKKPEDGKMKGI----AFIKDPDGYWIEIFDR 174          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_PSEPU (Lactoylglutathione lyase OS=Pseudomonas putida GN=gloA PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 49/150 (32.67%), Postives = 70/150 (46.67%), Query Frame = 3
Query:  165 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY---------------FVVELTYNYGVT-----SYDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPTP 542
            H + RV D+++++ +YT   G +L+ KRD  E K+S  FL      +                 V+ELT+N+G       +Y  G     GFGH+ ++  DV    E   A    V  +     G   H AF+KDPDGY  E+IQ  PTP
Sbjct:   27 HTMLRVKDIEKSLDFYTRVLGFKLVDKRDFVEAKFSLYFLALVDPATIPADDDARHQWMKSIPGVLELTHNHGTERDADFAYHHGNTDPRGFGHICVSVPDVVAACERFEAL--QVPFQKRLSDGRMNHLAFIKDPDGYWVEVIQ--PTP 172          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_RAT (Lactoylglutathione lyase OS=Rattus norvegicus GN=Glo1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 46/148 (31.08%), Postives = 70/148 (47.30%), Query Frame = 3
Query:  159 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY---------------FVVELTYNYG-----VTSYDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTREP--GPLKGMTTHFAFVKDPDGYIFELI 524
            L   + R+ D  +++ +YT   G+ LL+K D P  K+S  FL +  +                    +ELT+N+G       SY  G     GFGH+ IA  DVY+  +     G    ++P  G +KG+    AFV+DPDGY  E++
Sbjct:   32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPSMKFSLYFLAYEDKNDIPKDKTERTAWAFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYEACKRFEELGVKFVKKPDDGKMKGL----AFVQDPDGYWIEIL 175          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_ARATH (Lactoylglutathione lyase OS=Arabidopsis thaliana GN=At1g08110 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = 3
Query:  171 VYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGF---------GPEQSYF------VVELTYNYGVTS------YDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGY---IFELIQRGPT 539
            ++R+ D   ++ +Y+   GM LL++ D  E K+S  FLG+           E++ +       +ELT+N+G  S      Y  G     GFGH+ +  +DV+K  E     G    ++P    G   + AF+KDPDGY   IF+L   G T
Sbjct:   32 MFRIKDPKASLDFYSRVLGMSLLKRLDFSEMKFSLYFLGYEDTTTAPTDPTERTVWTFGQPATIELTHNWGTESDPEFKGYHNGNSEPRGFGHIGVTVDDVHKACERFEELGVEFAKKPN--DGKMKNIAFIKDPDGYWIEIFDLKTIGTT 180          
BLAST of FC920333 vs. ExPASy Swiss-Prot
Match: LGUL_BRAJU (Lactoylglutathione lyase OS=Brassica juncea GN=GLY I PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 47/151 (31.13%), Postives = 70/151 (46.36%), Query Frame = 3
Query:  171 VYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY---------------FVVELTYNYGVTS------YDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGY---IFELIQRGPT 539
            ++RV D   ++ +Y+   GM LL++ D  E K+S  FLG+    +                  +ELT+N+G  S      Y  G     GFGH+ +  +DV+K  E     G    ++P    G   + AF+KDPDGY   IF+L   G T
Sbjct:   32 MFRVKDPKASLDFYSRVLGMSLLKRLDFSEMKFSLYFLGYEDTSTAPTDPTERTVWTFGRPATIELTHNWGTESDPEFKGYHNGNSEPRGFGHIGVTVDDVHKACERFEQLGVEFVKKPH--DGKMKNIAFIKDPDGYWIEIFDLKTIGTT 180          
The following BLAST results are available for this feature:
BLAST of FC920333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
LGUL_SOLLC5.751e-1331.51Lactoylglutathione lyase OS=Solanum lycopersicum G... [more]
LGUL_CICAR2.854e-1232.65Lactoylglutathione lyase OS=Cicer arietinum PE=2 S... [more]
LGUL_SOYBN6.359e-1231.29Lactoylglutathione lyase OS=Glycine max GN=GLXI PE... [more]
LGUL_PSEPU2.416e-1132.67Lactoylglutathione lyase OS=Pseudomonas putida GN=... [more]
LGUL_RAT7.030e-1131.08Lactoylglutathione lyase OS=Rattus norvegicus GN=G... [more]
LGUL_ARATH7.030e-1131.13Lactoylglutathione lyase OS=Arabidopsis thaliana G... [more]
LGUL_BRAJU9.182e-1131.13Lactoylglutathione lyase OS=Brassica juncea GN=GLY... [more]

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Properties
Property NameValue
Genbank descriptionC32007A03EF RVDevelop1 Citrus clementina cDNA clone C32007A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920333 ID=FC920333; Name=FC920333; organism=Citrus clementina; type=EST; length=738bp
GATAGCTAAGTCTGGAAAATAGATCATCTTCTAGATCATTTCTCACACTT
GCGGCTTCACTCCGACTTTCTGAGTGATTCCATATCAAAATGGCTGAGGC
TTCTCCTGCTGTTGCTAATGCCGAGTTGCTGGAATGGCCAAAGAAAGATA
AGCGACGCCTCCTTCATGCTGTGTATCGTGTTGGTGATCTTGATCGCACC
ATCAAATATTACACTGAATGCTTTGGGATGGAGCTGTTGAGAAAGAGAGA
CGTCCCAGAAGAGAAATACTCAAATGCCTTTCTTGGATTTGGCCCCGAAC
AGTCTTACTTTGTTGTGGAGTTAACATACAACTATGGTGTAACTTCATAT
GATATTGGAACTGGTTTTGGCCATCTTGCAATTGCAACTGAAGATGTTTA
CAAAATGGTTGAAAACATTCGTGCCAAGGGTGGCAATGTGACTAGAGAGC
CTGGTCCACTTAAAGGTATGACAACTCACTTTGCCTTTGTGAAGGATCCC
GATGGTTATATTTTTGAACTCATCCAGAGAGGTCCAACTCCTGAACCACT
CTGTCAAGTAATGCTTCGCGTTGGCGATCTTGGTCGCTCCATCAAGTTCT
ATGAAAAGGCTTTGGGGATGAAACTGTTAAGGACAATTGATAGTCCTGAA
TTGAAGTGCGCCCTGGCCATGCTTGGATATGCTGAGGAAGATCAGACTAC
TGTTCTGGAGTTAGCTTATAGTTATGCTGTGACTGAAT
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