FC920336

Overview
NameFC920336
Unique NameFC920336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15544 contig Ccv1_Contig15544:86..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_MOUSE (Aspartate aminotransferase, cytoplasmic OS=Mus musculus GN=Got1 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.028e-54
Identity = 108/216 (50.00%), Postives = 143/216 (66.20%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            M   SVF ++ +AP   +  +T  +  D  P K+NLGVGAYRT+E +P VL VVRK EQ + ND S   EYLPI+GL +F   +++L+LG +SPAI++NRV  VQ L GTG+LR+GA+FL R Y+        IY+  PTW NH  VF+ AG   ++ Y Y+D   RGL+ QG L DL  AP  +I +LHACAHNPTG DPT EQW+QI  +M+ +
Sbjct:    1 MAPPSVFAQVPQAPPVLVFKLTADFRDDPDPRKVNLGVGAYRTDESQPWVLPVVRKVEQKIANDNSLNHEYLPILGLAEFRSCASRLVLGDNSPAIRENRVGGVQSLGGTGALRIGADFLGRWYNGTDNKNTPIYVSSPTWENHNAVFSAAGFKDIRPYCYWDAEKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIAAVMQRR 216          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_PIG (Aspartate aminotransferase, mitochondrial OS=Sus scrofa GN=GOT2 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 103/212 (48.58%), Postives = 145/212 (68.40%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            + S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG ++  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+P+WGNH  +F  AG+ + +YRYYDP T G +F G LED+   P+ +++LLHACAHNPTGVDP  EQW+++  L++  + +
Sbjct:   29 ASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLHSYRYYDPKTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLF 239          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_HUMAN (Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 103/201 (51.24%), Postives = 141/201 (70.15%), Query Frame = 3
Query:   96 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG +S  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+PTWGNH  +F  AG+ ++ YRYYDP T G +F G +ED+   P  +++LLHACAHNPTGVDP  EQW++I  +++ ++ +
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLF 239          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_CHICK (Aspartate aminotransferase, cytoplasmic OS=Gallus gallus GN=GOT1 PE=1 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 107/212 (50.47%), Postives = 143/212 (67.45%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            S+F  + RAP   +  +T  + +D    K+NLGVGAYRT+EG+P VL VVRK EQL+  D S   EYLPI+GL +F   ++++ LG DSPAI   RV +VQ L GTG+LR+GAEFL R Y+        +Y+  PTW NH  VF  AG   ++TYRY+D A RGL+ QGLL+D+  AP  +I +LHACAHNPTG DPT ++W+QI  +M+ +
Sbjct:    4 SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGDGSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRRWYNGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLDDMEKAPEFSIFILHACAHNPTGTDPTPDEWKQIAAVMKRR 215          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_MACFA (Aspartate aminotransferase, cytoplasmic OS=Macaca fascicularis GN=GOT1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.754e-54
Identity = 106/216 (49.07%), Postives = 144/216 (66.67%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            M   SVF ++ +A    +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K EQ + ND S   EYLPI+GL +F   +++L LG DSPA+K+ RV  VQ L GTG+LR+GA+FLAR Y+        +Y+  PTW NH  VF+ AG   +++YRY+D   RGL+ QG L DL  AP  +I++LHACAHNPTG DPT EQW+QI  +M+ +
Sbjct:    1 MAPPSVFSEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIIVLHACAHNPTGTDPTPEQWKQIASVMKHR 216          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_PONAB (Aspartate aminotransferase, mitochondrial OS=Pongo abelii GN=GOT2 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.907e-54
Identity = 102/201 (50.75%), Postives = 141/201 (70.15%), Query Frame = 3
Query:   96 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG +S  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G +ED+   P  +++LLHACAHNPTGVDP  EQW++I  +++ ++ +
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLF 239          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_MACFA (Aspartate aminotransferase, mitochondrial OS=Macaca fascicularis GN=GOT2 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.907e-54
Identity = 102/201 (50.75%), Postives = 141/201 (70.15%), Query Frame = 3
Query:   96 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG +S  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G +ED+   P  +++LLHACAHNPTGVDP  EQW++I  +++ ++ +
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLF 239          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_PIG (Aspartate aminotransferase, cytoplasmic OS=Sus scrofa GN=GOT1 PE=1 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 5.103e-54
Identity = 107/216 (49.54%), Postives = 143/216 (66.20%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            M   SVF ++ +A    +  +   + +D  P K+NLGVGAYRT++ +P VL VVRK EQ + ND S   EYLPI+GL +F   +++L LG DSPA+++ RV  VQ L GTG+LR+GAEFLAR Y+        +Y+  PTW NH  VFT AG   +++YRY+D   RGL+ QG L DL  AP  +I +LHACAHNPTG DPT EQW+QI  +M+ +
Sbjct:    1 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR 216          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_RAT (Aspartate aminotransferase, cytoplasmic OS=Rattus norvegicus GN=Got1 PE=1 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.939e-53
Identity = 103/216 (47.69%), Postives = 143/216 (66.20%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            M   S F ++ +AP   +  +   +  D  P K+NLGVGAYRT++ +P VL VVRK EQ + ND S   EYLPI+GL +F   +++L+LG +SPA+++NRV  VQ L GTG+LR+GA+FL R Y+        +Y+  PTW NH  VF+ AG   +++YRY+D   RGL+ QG L DL  AP  +I +LHACAHNPTG DPT E+W+QI  +M+ +
Sbjct:    1 MAPPSFFAQVPQAPPVLVFKLIADFRDDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQKIANDHSLNHEYLPILGLAEFRSCASQLVLGDNSPALRENRVGGVQSLGGTGALRIGADFLGRWYNGTDNKNTPVYVSSPTWENHNGVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTEEEWKQIAAVMKRR 216          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_HORSE (Aspartate aminotransferase, cytoplasmic OS=Equus caballus GN=GOT1 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 7.368e-53
Identity = 104/216 (48.15%), Postives = 144/216 (66.67%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            M S S+F ++ +A    +  +T  + +D  P K+NLGVGAYRT++ +P VL VVRK EQ + N+ S   EYLPI+GL +F   +++L LG DSPA+++ RV  VQ L GTG+LR+GAEFL+R Y+        +Y+  PTW NH  VF+ AG   +++Y Y+D   RGL+ QG L DL  AP  +I +LHACAHNPTG DPT EQW+QI  +M+ +
Sbjct:    1 MTSPSIFVEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQKIANNSSLNHEYLPILGLAEFRSCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLSRWYNGTNNKNTPVYVSSPTWENHNGVFSGAGFKDIRSYHYWDATKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR 216          
The following BLAST results are available for this feature:
BLAST of FC920336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
AATC_MOUSE1.028e-5450.00Aspartate aminotransferase, cytoplasmic OS=Mus mus... [more]
AATM_PIG1.343e-5448.58Aspartate aminotransferase, mitochondrial OS=Sus s... [more]
AATM_HUMAN1.343e-5451.24Aspartate aminotransferase, mitochondrial OS=Homo ... [more]
AATC_CHICK1.343e-5450.47Aspartate aminotransferase, cytoplasmic OS=Gallus ... [more]
AATC_MACFA1.754e-5449.07Aspartate aminotransferase, cytoplasmic OS=Macaca ... [more]
AATM_PONAB3.907e-5450.75Aspartate aminotransferase, mitochondrial OS=Pongo... [more]
AATM_MACFA3.907e-5450.75Aspartate aminotransferase, mitochondrial OS=Macac... [more]
AATC_PIG5.103e-5449.54Aspartate aminotransferase, cytoplasmic OS=Sus scr... [more]
AATC_RAT1.939e-5347.69Aspartate aminotransferase, cytoplasmic OS=Rattus ... [more]
AATC_HORSE7.368e-5348.15Aspartate aminotransferase, cytoplasmic OS=Equus c... [more]

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Properties
Property NameValue
Genbank descriptionC32007A06EF RVDevelop1 Citrus clementina cDNA clone C32007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920336 ID=FC920336; Name=FC920336; organism=Citrus clementina; type=EST; length=734bp
GATTTTTTTTTCCCCCACAAACTCTCTCTTTTCATTGATTTCTTGAAAGA
AATTTAATGGATTCTGAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGA
AGATCCCATTCTAGGGGTCACTGTTGCTTATAACAAGGATACAAGCCCAG
TCAAGTTGAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCT
CTGGTTCTGAATGTAGTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCA
GTCACGGGTCAAAGAGTATCTTCCCATTGTTGGACTTGTGGATTTTAATA
AATTGAGTGCAAAGCTCATCCTTGGTGCTGACAGCCCTGCGATTAAAGAC
AACAGAGTGACCACCGTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGT
TGGAGCTGAGTTTCTGGCAAGGCATTATCACCAACTTACCATATATATTC
CACAGCCAACATGGGGAAACCATCCCAAAGTTTTCACTTTAGCAGGATTG
TCTGTGAAGACCTACCGCTATTATGATCCAGCAACACGTGGGCTAAACTT
CCAAGGCTTGCTGGAGGATCTTAGGGCTGCACCATCCGGAGCTATAGTTC
TTCTTCATGCATGTGCTCATAATCCAACTGGTGTTGACCCGACCCTTGAG
CAGTGGGAGCAGATCAGGCAGCTGATGAGGTCAAAGGATTGTTACCTTTC
TTGACAGTGCTATCAGGNTTTGCAGTGGTAGCTA
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