FC920336

Overview
NameFC920336
Unique NameFC920336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15544 contig Ccv1_Contig15544:86..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AAT1_ARATH (Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=ASP1 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.776e-52
Identity = 106/211 (50.24%), Postives = 136/211 (64.45%), Query Frame = 3
Query:   54 LMDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            L    S +  +  AP+DPILGVT A+  D SP K+N+GVGAYR + GKP+VL  VR+AE+ L    S   EYLP+ G      L+ KL  G +S  IKD R+  VQ LSGTG+ R+ A+F  R      IYIP PTW NH  ++  A +  KTY YY P T+GL+F  L++D++ AP G+  LLHACAHNPTGVDPT EQW +I QL ++K
Sbjct:   26 LRSMSSWWKSVEPAPKDPILGVTEAFLADPSPEKVNVGVGAYRDDNGKPVVLECVREAEKRLAG--STFMEYLPMGGSAKMVDLTLKLAYGDNSEFIKDKRIAAVQTLSGTGACRLFADFQKRFSPGSQIYIPVPTWSNHHNIWKDAQVPQKTYHYYHPETKGLDFSALMDDVKNAPEGSFFLLHACAHNPTGVDPTEEQWREISQLFKAK 234          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_DICDI (Aspartate aminotransferase, cytoplasmic OS=Dictyostelium discoideum GN=aatB PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.237e-52
Identity = 103/208 (49.52%), Postives = 141/208 (67.79%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTI-YIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKD 689
            ++F  +   P DPILGV+ A+  DT P K++  VGAYR E GKP VL  V +AE+ L+      KEYLPI G+ +FNKLSAKL+ G D+   K+ R+ TVQ LSGTG+LR+G  F+ ++    T+ YI +P+W NH  +   +G+    Y YYDP T+GL+F G++ D+RAAP+G++ +LH CAHNPTGVDPT EQW  I  +MR K+
Sbjct:   39 TLFANVPLGPVDPILGVSTAFKADTDPRKVDTSVGAYRDENGKPYVLKCVFEAEKRLLGAP---KEYLPIDGIPEFNKLSAKLLYG-DAMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAGTVVYISRPSWTNHHNICKESGVQSAEYAYYDPKTKGLDFTGMINDMRAAPNGSVFVLHLCAHNPTGVDPTHEQWNIIADVMREKN 242          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_CAEEL (Probable aspartate aminotransferase, cytoplasmic OS=Caenorhabditis elegans GN=T01C8.5 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.621e-50
Identity = 98/210 (46.67%), Postives = 138/210 (65.71%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            S F  I  AP   +      Y  +T+PVK+NL +GAYRTEEG+P VL VV + E  + ND S   EYLP++G   F K + +L+LGA+SPAIK+ R   VQCLSGTG+LR GAEFLA   +  T+Y+  PTWGNH  VF  AG  +V  Y ++D   + ++ +  L DL +AP  ++++LH CAHNPTG+DPT EQW+ + ++++ K+ +
Sbjct:    2 SFFDGIPVAPPIEVFHKNKMYLDETAPVKVNLTIGAYRTEEGQPWVLPVVHETEVEIANDTSLNHEYLPVLGHEGFRKAATELVLGAESPAIKEERSFGVQCLSGTGALRAGAEFLASVCNMKTVYVSNPTWGNHKLVFKKAGFTTVADYTFWDYDNKRVHIEKFLSDLESAPEKSVIILHGCAHNPTGMDPTQEQWKLVAEVIKRKNLF 211          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AAT_HAEIN (Aspartate aminotransferase OS=Haemophilus influenzae GN=aspC PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.217e-47
Identity = 88/201 (43.78%), Postives = 129/201 (64.18%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQL 674
            +F  I  AP DPILG+  A+  +T   K+NLG+G Y+  +G   +++ V++AE+ L  D+ + K YL I G+ D+N+ +  L+ G DS  I+ NR  TVQ L GTG+LR+ AEF+ R      ++I  PTW NH  +F   G++++ YRYYD   + L+++ LLEDL  A  G +VLLH C HNPTG+DPT EQW+++  L
Sbjct:    1 MFEHIKAAPADPILGLGEAFKSETRENKINLGIGVYKDAQGTTPIMHAVKEAEKRLF-DKEKTKNYLTIDGIADYNEQTKALLFGKDSEVIQSNRARTVQSLGGTGALRIAAEFIKRQTKAQNVWISTPTWPNHNAIFNAVGMTIREYRYYDAERKALDWEHLLEDLSQASEGDVVLLHGCCHNPTGIDPTPEQWQELAAL 200          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AAT_PSEAE (Aspartate aminotransferase OS=Pseudomonas aeruginosa GN=aspC PE=3 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.590e-47
Identity = 93/206 (45.15%), Postives = 133/206 (64.56%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            S+F  +  AP DPILG+  A+N DT P K+NLGVG Y  EEG+  +L  V+ AE+  +   +  + YLPI G+  +++   KL+ G +S  +   RV T Q + GTG+L++GA+FL R     T+ I  P+W NH  +F  AG  V+ YRYYD A+ G+N  GLLEDL A P+ +IV+LHAC HNPTGVD  L+ W+Q+  ++++K
Sbjct:    2 SLFSAVEMAPRDPILGLNEAFNADTRPGKINLGVGVYYNEEGRIPLLRAVQAAEKARIEAHAP-RGYLPIEGIAAYDQGVQKLLFGNESELLAAGRVVTTQAVGGTGALKLGADFLKRLLPDATVAISDPSWENHRALFEAAGFPVQNYRYYDAASNGVNRAGLLEDLNALPARSIVVLHACCHNPTGVDLELDDWKQVLDVLKAK 206          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_YEAST (Aspartate aminotransferase, cytoplasmic OS=Saccharomyces cerevisiae GN=AAT2 PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.031e-46
Identity = 90/209 (43.06%), Postives = 129/209 (61.72%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKD 689
            S ++F  I   P D + G+   Y +D    K++LG+GAYR + GKP VL  V+ AE+L+ ND S   EYL I GL      +AK+I G  S A +++RV +VQ LSGTG+L + A+F ++ +    +Y+ +PTW NH  +F   GL   TY Y+   T+ L+  G L  ++ AP G+I +LH+CAHNPTG+DPT EQW QI   + SK+
Sbjct:    2 SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDAFQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKN 210          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AAT_ECOLI (Aspartate aminotransferase OS=Escherichia coli (strain K12) GN=aspC PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.758e-46
Identity = 91/205 (44.39%), Postives = 124/205 (60.49%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ +++  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LRV A+FLA++     +++  P+W NH  VF  AGL V+ Y YYD     L+F  L+  L  A +G +VL H C HNPTG+DPTLEQW+ + QL   K
Sbjct:    1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK 204          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AAT_SALTI (Aspartate aminotransferase OS=Salmonella typhi GN=aspC PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.943e-45
Identity = 89/205 (43.41%), Postives = 124/205 (60.49%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ +++  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LR+ A+FLA++     +++  P+W NH  VF  AGL V+ Y YYD     L+F+ L   L  A +G +VL H C HNPTG+DPTLEQW+ + +L   K
Sbjct:    1 MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFARCTQELLFGKGSALINDKRARTAQTPGGTGALRIAADFLAKNTPVKRVWVSNPSWPNHKSVFNAAGLEVREYAYYDAENHSLDFEALQASLSEAQAGDVVLFHGCCHNPTGIDPTLEQWQVLAELSVEK 204          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AAT_SALTY (Aspartate aminotransferase OS=Salmonella typhimurium GN=aspC PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.315e-45
Identity = 89/205 (43.41%), Postives = 124/205 (60.49%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            +F  I  AP DPILG+   +  D  P K+NLG+G Y+ E GK  VL  V+KAEQ L+ +++  K YL I G+ +F + + +L+ G  S  I D R  T Q   GTG+LR+ A+FLA++     +++  P+W NH  VF  AGL V+ Y YYD     L+F+ L   L  A +G +VL H C HNPTG+DPTLEQW+ + +L   K
Sbjct:    1 MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFARCTQELLFGKGSALINDKRARTAQTPGGTGALRIAADFLAKNTPVKRVWVSNPSWPNHKSVFNAAGLEVREYAYYDAENHTLDFEALQASLSEAQAGDVVLFHGCCHNPTGIDPTLEQWQVLAELSVEK 204          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_SCHPO (Aspartate aminotransferase, cytoplasmic OS=Schizosaccharomyces pombe GN=aat2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.450e-41
Identity = 83/211 (39.34%), Postives = 128/211 (60.66%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLT---IYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            S+  F  I  A  D I  +   Y++D  P K+N+ VGAYR + GKP +L  V+KA +++    S   EYLPI GL  F K +A+++   +   + ++RV ++Q +SGTG+  + A F+   Y + T   +YI  PTW  H  ++   G++V TY Y+D   R  +++G+L  +++AP G+I LLHACAHNPTG+DPT EQW  I + + S+
Sbjct:    2 SDYGFANIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFNHEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHTGAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHACAHNPTGIDPTREQWLSIFESLLSR 212          
The following BLAST results are available for this feature:
BLAST of FC920336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
AAT1_ARATH4.776e-5250.24Aspartate aminotransferase, mitochondrial OS=Arabi... [more]
AATC_DICDI6.237e-5249.52Aspartate aminotransferase, cytoplasmic OS=Dictyos... [more]
AATC_CAEEL2.621e-5046.67Probable aspartate aminotransferase, cytoplasmic O... [more]
AAT_HAEIN1.217e-4743.78Aspartate aminotransferase OS=Haemophilus influenz... [more]
AAT_PSEAE1.590e-4745.15Aspartate aminotransferase OS=Pseudomonas aerugino... [more]
AATC_YEAST1.031e-4643.06Aspartate aminotransferase, cytoplasmic OS=Sacchar... [more]
AAT_ECOLI1.758e-4644.39Aspartate aminotransferase OS=Escherichia coli (st... [more]
AAT_SALTI1.943e-4543.41Aspartate aminotransferase OS=Salmonella typhi GN=... [more]
AAT_SALTY3.315e-4543.41Aspartate aminotransferase OS=Salmonella typhimuri... [more]
AATC_SCHPO8.450e-4139.34Aspartate aminotransferase, cytoplasmic OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionC32007A06EF RVDevelop1 Citrus clementina cDNA clone C32007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920336 ID=FC920336; Name=FC920336; organism=Citrus clementina; type=EST; length=734bp
GATTTTTTTTTCCCCCACAAACTCTCTCTTTTCATTGATTTCTTGAAAGA
AATTTAATGGATTCTGAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGA
AGATCCCATTCTAGGGGTCACTGTTGCTTATAACAAGGATACAAGCCCAG
TCAAGTTGAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCT
CTGGTTCTGAATGTAGTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCA
GTCACGGGTCAAAGAGTATCTTCCCATTGTTGGACTTGTGGATTTTAATA
AATTGAGTGCAAAGCTCATCCTTGGTGCTGACAGCCCTGCGATTAAAGAC
AACAGAGTGACCACCGTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGT
TGGAGCTGAGTTTCTGGCAAGGCATTATCACCAACTTACCATATATATTC
CACAGCCAACATGGGGAAACCATCCCAAAGTTTTCACTTTAGCAGGATTG
TCTGTGAAGACCTACCGCTATTATGATCCAGCAACACGTGGGCTAAACTT
CCAAGGCTTGCTGGAGGATCTTAGGGCTGCACCATCCGGAGCTATAGTTC
TTCTTCATGCATGTGCTCATAATCCAACTGGTGTTGACCCGACCCTTGAG
CAGTGGGAGCAGATCAGGCAGCTGATGAGGTCAAAGGATTGTTACCTTTC
TTGACAGTGCTATCAGGNTTTGCAGTGGTAGCTA
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