FC920336

Overview
NameFC920336
Unique NameFC920336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15544 contig Ccv1_Contig15544:86..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: TYRB_ECOLI (Aromatic-amino-acid aminotransferase OS=Escherichia coli (strain K12) GN=tyrB PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.211e-40
Identity = 81/206 (39.32%), Postives = 121/206 (58.74%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKD 689
            +F K+     DPIL +   + +D    K+NL +G Y  E+G    L  V +AE  L         YLP+ GL  +    A L+ GAD P +K  RV T+Q L G+G+L+VGA+FL R++ +  +++  PTW NH  +F  AG  V TY +YD AT G+ F  LL  L+  P+ +IVLLH C HNPTG D T +QW+ + +++++++
Sbjct:    1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARE 206          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: TYRB_SALTY (Aromatic-amino-acid aminotransferase OS=Salmonella typhimurium GN=tyrB PE=3 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 7.153e-40
Identity = 81/206 (39.32%), Postives = 118/206 (57.28%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKD 689
            +F K+     DPIL +   +  D+   K+NL +G Y  E+G    L  V +AE  L         YLP+ GL  +    A L+ GAD P ++  RV T+Q L G+G+L+VGA+FL R++    +++  PTW NH  +F  AG  V TY +YD AT G+ F  LL  L   P+ +IVLLH C HNPTG D T  QW+ + ++++++D
Sbjct:    1 MFQKVDAYAGDPILSLMERFKDDSRHDKVNLSIGLYYNEDGIIPQLKTVAEAEARLNAQPHGASLYLPMEGLNTYRHTIAPLLFGADHPVLQQQRVATIQTLGGSGALKVGADFLKRYFPDAGVWVSDPTWENHIAIFAGAGFEVSTYPWYDDATNGIRFNDLLATLNTLPARSIVLLHPCCHNPTGADLTPSQWDAVIEIVKARD 206          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: TYRB_KLEPN (Tyrosine aminotransferase OS=Klebsiella pneumoniae GN=tyrB PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.744e-38
Identity = 75/205 (36.59%), Postives = 122/205 (59.51%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            +F K+     DPIL +   + +D    K+NL +G Y  ++G    L  V +AE  L  +      YLP+ G   + +  A L+ GA+  A+K NR+ ++Q + G+G+L+VGA+FL R++ +  +++  PTW NH  +F  AG  V TY ++D AT G+ F+ LL  L+  P+  IVLLH C HNPTG D T  QW+++ ++++++
Sbjct:    1 MFQKVDAYAGDPILSLMERFKEDPRSDKVNLSIGLYYNDDGIIPQLQAVAEAEARLNAEPHGASLYLPMEGFSGYRQAIAPLLFGAEHTALKQNRIASIQTVGGSGALKVGADFLKRYFPESHVWVSDPTWENHIAIFEGAGFEVSTYPWFDKATNGVRFENLLAMLQTLPARDIVLLHPCCHNPTGADLTPAQWDRVVEVLKAR 205          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: PHHC_PSEAE (Aromatic-amino-acid aminotransferase OS=Pseudomonas aeruginosa GN=phhC PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.307e-33
Identity = 81/207 (39.13%), Postives = 112/207 (54.11%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKD 689
            S F K+ R P DPILG+  AY  D    KL+LGVG Y+  +G   +L  V+ AEQ LV +Q   K Y+   G   F    A+L LGA SP + + R    Q   GTG+LR+  +F+A       I++  PTW  H  +F  AGL V  Y Y     R L+ + +L  L   P G +VLLHAC HNPTG D + + W ++  ++R ++
Sbjct:    2 SHFAKVARVPGDPILGLLDAYRNDPRADKLDLGVGVYKDAQGLTPILRSVKLAEQRLV-EQETTKSYVGGHGDALFAARLAELALGAASPLLLEQRADATQTPGGTGALRLAGDFIAHCLPGRGIWLSDPTWPIHETLFAAAGLKVSHYPYVSADNR-LDVEAMLAGLERIPQGDVVLLHACCHNPTGFDLSHDDWRRVLDVVRRRE 206          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: TYRB_PARDE (Aromatic-amino-acid aminotransferase OS=Paracoccus denitrificans GN=tyrB PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 72/202 (35.64%), Postives = 108/202 (53.47%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLM 677
            + G +     D IL +   +  D    K++LGVG Y+   G   ++  V  AEQ ++  ++  K Y  + G  +F K   +LILG     +K     T+  + GTG+LR   E        L +++  PTW NH  +    GL V+TYRY+D  TRG++F+G+  DL AA  G +VLLH C HNPTG + TL+QW +I  ++
Sbjct:    1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET-TKTYAGLSGEPEFQKAMGELILG---DGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASIL 198          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: ATTY_RHIME (Tyrosine aminotransferase OS=Rhizobium meliloti GN=tatA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.639e-26
Identity = 71/205 (34.63%), Postives = 112/205 (54.63%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            +F  + R  +DP+L +   + KD  P K++LGVG YR E G+  +   V+ AE+ L+  Q       P   LV  ++L    ++G D+  I+ + V  VQ   G+G+LR+ A+ +AR   +  I++  P+W NH  +F  AGL + TY ++D  ++ + F  L+  L  A SG  VLLHA  HNPTG   +  QW +I  L+  +
Sbjct:    1 MFDALARQADDPLLALIGLFRKDERPGKVDLGVGVYRDETGRTPIFRAVKAAEKRLLETQDSKAYIGPEGDLVFLDRLWE--LVGGDT--IERSHVAGVQTPGGSGALRLAADLIARMGGR-GIWLGLPSWPNHAPIFKAAGLDIATYDFFDIPSQSVIFDNLVSALEGAASGDAVLLHASCHNPTGGVLSEAQWMEIAALVAER 200          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_YEAST (Aspartate aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=AAT1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.678e-26
Identity = 73/216 (33.80%), Postives = 114/216 (52.78%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVN--DQSRVKEYLPIVGLVDFNKLSAKLILGADSPA-----IKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAP---------SGAIVLLHACAHNPTGVDPTLEQWEQI 665
            S   ++ RAP D +LG++  + K  +  K++L VG Y+   GK      V KA++L+ +  + ++   YLPI G  +F +   K +     P      +  +R++ VQ LSGTG+L V A+FLA    +  I+IP P+W NH  +F   G  ++  Y YY      ++  G +E L+            +   ++LHAC HNPTG+DPT EQWE+I
Sbjct:   18 SSLSRVPRAPPDKVLGLSEHFKKVKNVNKIDLTVGIYKDGWGKVTTFPSVAKAQKLIESHLELNKNLSYLPITGSKEFQENVMKFLFKESCPQFGPFYLAHDRISFVQTLSGTGALAVAAKFLALFISR-DIWIPDPSWANHKNIFQNNGFENIYRYSYYKDGQ--IDIDGWIEQLKTFAYNNQQENNKNPPCIILHACCHNPTGLDPTKEQWEKI 230          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC2_BOVIN (Putative aspartate aminotransferase, cytoplasmic 2 OS=Bos taurus GN=GOT1L1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17
Identity = 57/190 (30.00%), Postives = 95/190 (50.00%), Query Frame = 3
Query:  129 YNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTI-YIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            Y +D +P K+ L      T +G+P V +VVRK    +  D S   EY P++G+  F + S  L+ G +S  I +NR   VQ +  +G+ ++GA+FL        I YI       H  +F   G +V  + ++D A   L+   LL+ ++ AP G + ++ +  +       T  QW Q+  LM+SK+ +
Sbjct:   24 YKQDDNPNKMFLAYKVCMTSKGRPWVSSVVRKTRMQIAQDPSLNYEYTPVMGMKSFVQASLNLLFGKNSQVIVENRAGGVQTVGDSGAFQLGAQFLKSWCQSSQIVYIVSSQKEPHGLIFQDMGFTVYEHTFWDSAHLCLDPNMLLDVVKHAPHGCVFVIGSMGN----CQLTPSQWTQLMTLMKSKEIF 209          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC2_HUMAN (Putative aspartate aminotransferase, cytoplasmic 2 OS=Homo sapiens GN=GOT1L1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 58/193 (30.05%), Postives = 89/193 (46.11%), Query Frame = 3
Query:  129 YNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFL-ARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLH---ACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            Y +D  P K+ L      T EG P V  VV+K    +  D S   EYLP +GL  F + S  L+ G  S AI +NRV  V  +  +G+ ++G +FL A H     +YI       H  VF   G +V  Y  +DP    ++   LL  +   P G ++++     C   P+G       W ++  +++SK  +
Sbjct:   24 YKQDDYPNKIFLAYRVCMTNEGHPWVSLVVQKTRLQISQDPSLNYEYLPTMGLKSFIQASLALLFGKHSQAIVENRVGGVHTVGDSGAFQLGVQFLRAWHKDARIVYIISSQKELHGLVFQDMGFTVYEYSVWDPKKLCMDPDILLNVVEQIPHGCVLVMGNIIDCKLTPSG-------WAKLMSMIKSKQIF 209          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC2_MOUSE (Putative aspartate aminotransferase, cytoplasmic 2 OS=Mus musculus GN=Got1l1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 65/216 (30.09%), Postives = 99/216 (45.83%), Query Frame = 3
Query:   57 MDSESVFGKIVRAP--EDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIY-IPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            M S SVF  +  A   E  +L +   Y +D  P KL L      TEEG P V  VV K    +  D S   EYLP+VGL  F + S +L+ G  S AI + RV  V  +  +G+ ++GA+FL      + I  I          +F   G  V  Y  ++ +    +    +E L+  P G+I+++     N T    T  QW ++  +++SK  +
Sbjct:    1 MTSLSVFRDVPTAQKLEGSLLKI---YRQDGYPSKLFLAYKVCMTEEGHPWVSLVVHKTRLQIAEDPSLDYEYLPLVGLKSFIQSSLELLFGKHSEAIAEKRVGGVHIVGESGAFQLGAQFLKTWRKNVKIVCIVSCQKEQCGLIFQDMGFIVYEYSIWNASDLCSDPSMFVEVLQHIPVGSILVI----GNITDCKFTQNQWTKLMSIIKSKQIF 209          
The following BLAST results are available for this feature:
BLAST of FC920336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
TYRB_ECOLI3.211e-4039.32Aromatic-amino-acid aminotransferase OS=Escherichi... [more]
TYRB_SALTY7.153e-4039.32Aromatic-amino-acid aminotransferase OS=Salmonella... [more]
TYRB_KLEPN8.744e-3836.59Tyrosine aminotransferase OS=Klebsiella pneumoniae... [more]
PHHC_PSEAE1.307e-3339.13Aromatic-amino-acid aminotransferase OS=Pseudomona... [more]
TYRB_PARDE8.469e-3335.64Aromatic-amino-acid aminotransferase OS=Paracoccus... [more]
ATTY_RHIME2.639e-2634.63Tyrosine aminotransferase OS=Rhizobium meliloti GN... [more]
AATM_YEAST7.678e-2633.80Aspartate aminotransferase, mitochondrial OS=Sacch... [more]
AATC2_BOVIN1.714e-1730.00Putative aspartate aminotransferase, cytoplasmic 2... [more]
AATC2_HUMAN1.358e-1430.05Putative aspartate aminotransferase, cytoplasmic 2... [more]
AATC2_MOUSE1.271e-1230.09Putative aspartate aminotransferase, cytoplasmic 2... [more]

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Properties
Property NameValue
Genbank descriptionC32007A06EF RVDevelop1 Citrus clementina cDNA clone C32007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920336 ID=FC920336; Name=FC920336; organism=Citrus clementina; type=EST; length=734bp
GATTTTTTTTTCCCCCACAAACTCTCTCTTTTCATTGATTTCTTGAAAGA
AATTTAATGGATTCTGAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGA
AGATCCCATTCTAGGGGTCACTGTTGCTTATAACAAGGATACAAGCCCAG
TCAAGTTGAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCT
CTGGTTCTGAATGTAGTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCA
GTCACGGGTCAAAGAGTATCTTCCCATTGTTGGACTTGTGGATTTTAATA
AATTGAGTGCAAAGCTCATCCTTGGTGCTGACAGCCCTGCGATTAAAGAC
AACAGAGTGACCACCGTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGT
TGGAGCTGAGTTTCTGGCAAGGCATTATCACCAACTTACCATATATATTC
CACAGCCAACATGGGGAAACCATCCCAAAGTTTTCACTTTAGCAGGATTG
TCTGTGAAGACCTACCGCTATTATGATCCAGCAACACGTGGGCTAAACTT
CCAAGGCTTGCTGGAGGATCTTAGGGCTGCACCATCCGGAGCTATAGTTC
TTCTTCATGCATGTGCTCATAATCCAACTGGTGTTGACCCGACCCTTGAG
CAGTGGGAGCAGATCAGGCAGCTGATGAGGTCAAAGGATTGTTACCTTTC
TTGACAGTGCTATCAGGNTTTGCAGTGGTAGCTA
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