FC920340

Overview
NameFC920340
Unique NameFC920340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14122 contig Ccv1_Contig14122:44..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920340 vs. ExPASy Swiss-Prot
Match: LGUL_HAEIN (Lactoylglutathione lyase OS=Haemophilus influenzae GN=gloA PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 73/132 (55.30%), Postives = 92/132 (69.70%), Query Frame = 2
Query:  113 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQRGPTPEPL 508
            + LH + RVGDLDR+IKFY +  GM+LLR  + PE KY+ AFLG+   +S   +ELTYN+GV  Y+ GT +GH AI  +D+Y   E +RA GGNVTRE GPVKGG+T IAFV+DPDGY  E I+   T   L
Sbjct:    2 QILHTMLRVGDLDRSIKFYQDVLGMRLLRTSENPEYKYTLAFLGYEDGESAAEIELTYNWGVDKYEHGTAYGHIAIGVDDIYATCEAVRASGGNVTREAGPVKGGSTVIAFVEDPDGYKIEFIENKSTKSGL 133          

HSP 2 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  506 LCQVMLRAGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTRG 706
            +   MLR GDL RSIKFY+  LGM+LLRT + PEYKYTLA LGY + +    +ELTYN+GV +Y  G
Sbjct:    3 ILHTMLRVGDLDRSIKFYQDVLGMRLLRTSENPEYKYTLAFLGYEDGESAAEIELTYNWGVDKYEHG 69          
BLAST of FC920340 vs. ExPASy Swiss-Prot
Match: LGUL_NEIMB (Lactoylglutathione lyase OS=Neisseria meningitidis serogroup B GN=gloA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.785e-32
Identity = 61/125 (48.80%), Postives = 88/125 (70.40%), Query Frame = 2
Query:  113 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQR 487
            R LH + RVG+L++++ FY    GMKLLR++D PE +++ AF+G+G E    V+ELT+N+    YD+G  +GH A+  +D Y+  E ++ +GGNV RE GP+K GTT IAFV+DPDGY  E IQ+
Sbjct:    2 RLLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFVGYGDETDSTVLELTHNWDTERYDLGNAYGHIAVEVDDAYEACERVKRQGGNVVREAGPMKHGTTVIAFVEDPDGYKIEFIQK 126          

HSP 2 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  506 LCQVMLRAGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTRG 706
            L   MLR G+L +S+ FY+  LGMKLLR  D PE ++TLA +GY +E  +TVLELT+N+    Y  G
Sbjct:    3 LLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFVGYGDETDSTVLELTHNWDTERYDLG 69          
BLAST of FC920340 vs. ExPASy Swiss-Prot
Match: LGUL_NEIMA (Lactoylglutathione lyase OS=Neisseria meningitidis serogroup A GN=gloA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.785e-32
Identity = 61/125 (48.80%), Postives = 88/125 (70.40%), Query Frame = 2
Query:  113 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQR 487
            R LH + RVG+L++++ FY    GMKLLR++D PE +++ AF+G+G E    V+ELT+N+    YD+G  +GH A+  +D Y+  E ++ +GGNV RE GP+K GTT IAFV+DPDGY  E IQ+
Sbjct:    2 RLLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFVGYGDETDSTVLELTHNWDTERYDLGNAYGHIAVEVDDAYEACERVKRQGGNVVREAGPMKHGTTVIAFVEDPDGYKIEFIQK 126          

HSP 2 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  506 LCQVMLRAGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTRG 706
            L   MLR G+L +S+ FY+  LGMKLLR  D PE ++TLA +GY +E  +TVLELT+N+    Y  G
Sbjct:    3 LLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFVGYGDETDSTVLELTHNWDTERYDLG 69          
BLAST of FC920340 vs. ExPASy Swiss-Prot
Match: LGUL_YEAST (Lactoylglutathione lyase OS=Saccharomyces cerevisiae GN=GLO1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 84/235 (35.74%), Postives = 112/235 (47.66%), Query Frame = 2
Query:  122 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPE-------------QSHFVVELTYNYGV---TSYDIGT-------GFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELI---------QRGPTPEPLCQVMLRAGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYA--EEDQT----TVLELTYNYGVTEYTRGMH 712
            H   RV D  RT+KFYTE FGMKLL ++D  E K+S  FL F  +              +H V+ELT+N+G      Y I         GFGH   +  D+ K  E + ++G    +     +G    IAF   PDGY  ELI          +G         M+R  +  RS++FY+  LGMKLLRT +    K+TL  LGY   + D      +VLELT+N+G TE     H
Sbjct:   25 HTCLRVKDPARTVKFYTEHFGMKLLSRKDFEEAKFSLYFLSFPKDDIPKNKNGEPDVFSAHGVLELTHNWGTEKNPDYKINNGNEEPHRGFGHICFSVSDINKTCEELESQGVKFKKRLS--EGRQKDIAFALGPDGYWIELITYSREGQEYPKGSVGNKFNHTMIRIKNPTRSLEFYQNVLGMKLLRTSEHESAKFTLYFLGYGVPKTDSVFSCESVLELTHNWG-TENDPNFH 256          

HSP 2 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 47/142 (33.10%), Postives = 74/142 (52.11%), Query Frame = 2
Query:  113 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQS------HFVVELTYNYGVTS-----YDIGT----GFGHFAIATEDVYKLVENIRAK-GGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQRG 490
            +F H + R+ +  R+++FY    GMKLLR  +    K++  FLG+G  ++        V+ELT+N+G  +     Y  G     G+GH  I+ +D   L + I  K G  +   P   +G   +IAF+KDPDGY  E++  G
Sbjct:  182 KFNHTMIRIKNPTRSLEFYQNVLGMKLLRTSEHESAKFTLYFLGYGVPKTDSVFSCESVLELTHNWGTENDPNFHYHNGNSEPQGYGHICISCDDAGALCKEIEVKYGDKIQWSPKFNQGRMKNIAFLKDPDGYSIEVVPHG 323          
BLAST of FC920340 vs. ExPASy Swiss-Prot
Match: LGUL_SCHPO (Lactoylglutathione lyase OS=Schizosaccharomyces pombe GN=glo1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22
Identity = 77/220 (35.00%), Postives = 111/220 (50.45%), Query Frame = 2
Query:  122 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF--------GPEQS--HFVVELTYNYGVTS-----YDIGT-----GFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQV--------MLRAGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEE----DQTTVLELTYNYG 685
            H + RV DLD+++KFYTE FGMKL+ +    E ++S +FL F        G E+S    ++ELTYN+G        Y  G      GFGH     +++      + +KG +  ++     G   HIAF  DPD Y  EL+ +  T +P   +        M+R  D   SI FYEK LGMK++   D P  K+T   L Y  +    D+  +LELT+N+G
Sbjct:   14 HTMIRVKDLDKSLKFYTEVFGMKLIDQWVFEENEFSLSFLAFDGPGALNHGVERSKREGILELTYNFGTEKKEGPVYINGNTEPKRGFGHICFTVDNIESACAYLESKGVSFKKKLS--DGKMKHIAFALDPDNYWIELVSQSET-KPKANISNFRFNHTMVRVKDPEPSIAFYEK-LGMKVIDKADHPNGKFTNYFLAYPSDLPRHDREGLLELTHNWG 229          
BLAST of FC920340 vs. ExPASy Swiss-Prot
Match: GLOD4_RAT (Glyoxalase domain-containing protein 4 OS=Rattus norvegicus GN=Glod4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 65/209 (31.10%), Postives = 101/209 (48.33%), Query Frame = 2
Query:  110 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-----------KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQRGPT-PEPLCQVMLRAGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYT 700
            RR LH V++VG+  +T+ F+ +  GM++LR  +  E            K+S   +GFGPE  HFV ELTYNYG+  Y +G  F    +A+               N  R   P+      +   + P GY F L  R P+  +P+ +V L   DL +S+ ++   LGMK+    ++ ++    A+LGYA  D    LEL    G  +++
Sbjct:    4 RRALHFVFKVGNRFQTVHFFRDVLGMQVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPEDDHFVAELTYNYGIGDYKLGNDFMGLTLASSQAV----------SNARRLEWPLSKVAEGVFETEAPGGYKFYLQDRSPSQSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEQDEEKKW----ALLGYA--DDQCKLELQGIQGAVDHS 196          
BLAST of FC920340 vs. ExPASy Swiss-Prot
Match: GLOD4_MOUSE (Glyoxalase domain-containing protein 4 OS=Mus musculus GN=Glod4 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.861e-19
Identity = 64/208 (30.77%), Postives = 98/208 (47.12%), Query Frame = 2
Query:  110 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-----------KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQRGPT-PEPLCQVMLRAGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEY 697
            RR LH V++V +  +T+ F+ +  GM++LR  +  E            K+S   +GFGPE  HFV ELTYNYG+  Y +G  F    +A+               N  +   P+      I   + P GY F L  R P+  +P+ +V L   DL +S+ ++   LGMK+    ++ +     A+LGYA  D    LEL    G  ++
Sbjct:    4 RRALHFVFKVKNRFQTVHFFRDVLGMQVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPEDDHFVAELTYNYGIGDYKLGNDFMGITLASSQAV----------SNARKLEWPLSKVAEGIFETEAPGGYKFYLQDRSPSQSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEQDEEKQ----RALLGYA--DNQCKLELQGIQGAVDH 195          
BLAST of FC920340 vs. ExPASy Swiss-Prot
Match: GLOD4_CAEBR (Glyoxalase 1 OS=Caenorhabditis briggsae GN=glod-4 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 59/188 (31.38%), Postives = 96/188 (51.06%), Query Frame = 2
Query:  113 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-----------EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRAGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAE 643
            R LH V++V +  +TI FYT+   MK+LR  +             +E++S   +G+G E  HFV+ELTYNY +  Y++G  +    I ++ ++  +  I  +           K G   +A VKDPDG+ F++ +    P+ L +V L  GDL +S K++ + LGM ++      E K T   L + E
Sbjct:    4 RALHYVFKVANRAKTIDFYTKILEMKVLRHEEFDKGCEASCNGPYDERWSKTMIGYGSEDEHFVLELTYNYPIHKYELGNDYRAIVIDSDQLFDKISRIDHR-----------KSGCGRLA-VKDPDGHEFKIGKADHAPKVL-RVQLNVGDLEKSKKYWNELLGMGIV------EEKKTRVRLSFGE 172          
BLAST of FC920340 vs. ExPASy Swiss-Prot
Match: GLOD4_CAEEL (Glyoxalase 1 OS=Caenorhabditis elegans GN=glod-4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.510e-18
Identity = 52/169 (30.77%), Postives = 91/169 (53.85%), Query Frame = 2
Query:  113 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-----------KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRAGDLGRSIKFYEKALGMKLL 586
            R LH V++V +  +TI F+T    MK+LR  +  +            ++S   +G+G E  HFV+E+TYNY +  Y++G  +    I ++ +++ VE I  +           K G   +A VKDPDG+ F++ +   +P+ L +V +  GDL +S K++ + LGM ++
Sbjct:    4 RALHYVFKVANRAKTIDFFTNVLNMKVLRHEEFEKGCEATCNGPYNGRWSKTMIGYGSEDEHFVLEITYNYPIHKYELGNDYRAIVIDSDQLFEKVEKINHR-----------KSGCGRLA-VKDPDGHEFKIGKADQSPKVL-RVQVNVGDLEKSKKYWNETLGMPIV 159          
BLAST of FC920340 vs. ExPASy Swiss-Prot
Match: GLOD4_HUMAN (Glyoxalase domain-containing protein 4 OS=Homo sapiens GN=GLOD4 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 63/205 (30.73%), Postives = 90/205 (43.90%), Query Frame = 2
Query:  110 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE--------------------------KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPVKGGTTHIAFVKDPDGYIFELIQRG-PTPEPLCQVMLRAGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAE 643
            RR LH V++VG+  +T +FY +  GMK+        E                          K+S   +GFGPE  HFV ELTYNYGV  Y +G  F    +A+               N  +   P+      +   + P GY F L  R  P  +P+ +V L   DL +S+ ++   LGMK+    +K E K   A+LGYA+
Sbjct:    4 RRALHFVFKVGNRFQTARFYRDVLGMKVESCSVARLECSGAISAHCSDYTRITEDSFSKPYDGKWSKTMVGFGPEDDHFVAELTYNYGVGDYKLGNDFMGITLASSQAV----------SNARKLEWPLTEVAEGVFETEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKI---YEKDEEKQR-ALLGYAD 194          
The following BLAST results are available for this feature:
BLAST of FC920340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
LGUL_HAEIN4.540e-3655.30Lactoylglutathione lyase OS=Haemophilus influenzae... [more]
LGUL_NEIMB1.785e-3248.80Lactoylglutathione lyase OS=Neisseria meningitidis... [more]
LGUL_NEIMA1.785e-3248.80Lactoylglutathione lyase OS=Neisseria meningitidis... [more]
LGUL_YEAST3.605e-2535.74Lactoylglutathione lyase OS=Saccharomyces cerevisi... [more]
LGUL_SCHPO2.857e-2235.00Lactoylglutathione lyase OS=Schizosaccharomyces po... [more]
GLOD4_RAT9.190e-2131.10Glyoxalase domain-containing protein 4 OS=Rattus n... [more]
GLOD4_MOUSE3.861e-1930.77Glyoxalase domain-containing protein 4 OS=Mus musc... [more]
GLOD4_CAEBR2.503e-1831.38Glyoxalase 1 OS=Caenorhabditis briggsae GN=glod-4 ... [more]
GLOD4_CAEEL9.510e-1830.77Glyoxalase 1 OS=Caenorhabditis elegans GN=glod-4 P... [more]
GLOD4_HUMAN6.815e-1630.73Glyoxalase domain-containing protein 4 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionC32007A10EF RVDevelop1 Citrus clementina cDNA clone C32007A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920340 ID=FC920340; Name=FC920340; organism=Citrus clementina; type=EST; length=714bp
GACACTTGCGACTTCACTCCGACTTTCTGAGTGATTCCATATCAAAATGG
CTGAGGCTTCTCCTGCTGCTGCTAATGCCGAGTTGCTGGAATGGCCAAAG
AAAGATAAGCGACGCTTCCTTCATGCTGTGTATCGTGTTGGTGATCTTGA
TCGCACCATCAAATTTTACACTGAATGCTTTGGGATGAAGCTGTTGAGAA
AGAGAGACGTCCCAGAAGAGAAATACTCAAATGCCTTTCTTGGATTTGGC
CCCGAACAGTCTCACTTTGTTGTGGAGTTAACATACAACTATGGTGTAAC
TTCATATGATATTGGAACTGGTTTTGGCCATTTTGCAATTGCAACTGAAG
ATGTTTACAAACTGGTTGAAAACATTCGTGCCAAGGGTGGCAATGTCACT
AGAGAGCCTGGTCCAGTTAAAGGTGGAACAACTCACATTGCCTTTGTGAA
GGATCCCGATGGTTATATTTTTGAACTCATCCAGAGAGGTCCAACTCCTG
AACCACTCTGTCAAGTAATGCTTCGCGCTGGCGATCTTGGTCGCTCCATC
AAGTTCTATGAAAAGGCTTTGGGGATGAAACTGTTAAGGACAGTTGATAA
ACCTGAATACAAGTACACCCTGGCCATGCTTGGATATGCTGAGGAAGATC
AGACTACTGTTCTGGAGTTAACTTATAATTATGGTGTGACTGAATATACC
AGGGGAATGCATAT
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