FC920341

Overview
NameFC920341
Unique NameFC920341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14123 contig Ccv1_Contig14123:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GLIP6_ARATH (GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=GLIP6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 71/193 (36.79%), Postives = 101/193 (52.33%), Query Frame = 3
Query:   66 ATSSASVAMRSWMMIIGIAFALGSIVRLAEARAFFVFGDSLVDSGNNNYLAT-TARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPL--PYLSPE---LNG-QRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSA 623
            ++SS  + M   ++I  +  A  S    +   A F FGDS+ D+GNN+Y    TA+AD PPYG  F  HRPTGRF+NG  + D IS+ +G    PL  P+L  +   LNG      G NFASAG G+L DT  +F+ +  +  QL  F       + V      + ++  +L L+  G ND  N  Y +P+ A
Sbjct:    3 SSSSMDLLMCLLLLISPVVLAKSS----STVPAIFTFGDSIFDAGNNHYNKNCTAQADFPPYGSSF-FHRPTGRFTNGRTVADFISEFVG---LPLQKPFLELQIQILNGTSNFSNGINFASAGSGLLLDTN-KFMGVTPIQTQLQQFQ------TLVEQNLIEKSIIQESLFLLETGSNDIFN--YFLPFRA 178          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: EXL4_ARATH (GDSL esterase/lipase EXL4 OS=Arabidopsis thaliana GN=EXL4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 50/154 (32.47%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSA 623
            A   FGDS++D+GNNN+L T  + +  PYG  F   R TGRF NG    DI+++ +G  +    Y     +   L  G  FAS G G+ +    + + ++    Q++ F  Y R++ A  G  +A  +V+ A++L++ G ND   +Y+  P +A
Sbjct:   28 ALLAFGDSILDTGNNNFLLTFMKGNIWPYGRSFSMRRATGRFGNGRVFSDIVAEGLGIKKILPAYRKLFNSPSDLRTGVCFASGGAGV-DPVTSKLLRVLTPKDQVNDFKGYIRKLKATAGPSRASSIVSNAVILVSQGNNDIGISYFGTPTAA 180          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: EXL5_ARATH (GDSL esterase/lipase EXL5 OS=Arabidopsis thaliana GN=EXL5 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 57/204 (27.94%), Postives = 97/204 (47.55%), Query Frame = 3
Query:  102 MMIIGIAFALGSIVRLAEARAFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLI---------------GANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYII 668
            + +  I F     VR     A   FGDS+VD+GNNNYL T  + +  PYG +F +  PTGRF NG    D++   +  S      +S E  G + ++               G +FAS G G+ +    + + ++    Q+  F  Y+R++  V+G  +A+++V  +++L++ G ND    Y +  + A  R  T   Y   ++
Sbjct:    9 LALFSIYFLSIEAVRNESFPALLAFGDSMVDTGNNNYLLTLMKGNYWPYGWNFDSKIPTGRFGNGRVFSDVVGIILKSSLQCFFVISAEGLGIKRIVPAYRKLYIAPSDLKTGVSFASGGAGV-DPVTSKLLRVLSPADQVKDFKGYKRKLKGVVGRSKAKKIVANSVILVSEGNNDIGITYAI--HDAGMRLMTPKVYTSKLV 209          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GLIP1_ARATH (GDSL esterase/lipase 1 OS=Arabidopsis thaliana GN=GLIP1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 58/171 (33.92%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYLAT--TARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYII 668
            A FVFGDS+ D+GNNNY+ T  + R++  PYG       PTGR S+G  IPD I++       P P L P     +   G NFAS G G L  T    V  I +  QL+ F + +  + + +G  + +++++RA+ L  +G ND+   Y     S+  +  +   YV Y++
Sbjct:   37 ALFVFGDSVFDAGNNNYIDTLSSVRSNYWPYG-QTTFKSPTGRVSDGRLIPDFIAEYAWLPLIP-PNLQPFNGNSQFAYGVNFASGGAGALVGTFSGLV--INLRTQLNNFKKVEEMLRSKLGDAEGKRVISRAVYLFHIGLNDY--QYPFTTNSSLFQSISNEKYVDYVV 201          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GLIP2_ARATH (GDSL esterase/lipase 2 OS=Arabidopsis thaliana GN=GLIP2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYLAT--TARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQF 638
            A FVFGDS+ D+GNNNY+ T  + R++  PYG       PTGR S+G  IPD I++       P  YL P     +   G +FASAG G L  T    V  I +  QL+ F + ++ + + +G  Q + +++RA+ L  +G ND     Y  P+S  S  F
Sbjct:   39 ALFVFGDSVFDAGNNNYIDTLPSFRSNYWPYG-QTTFKFPTGRVSDGRTIPDFIAEYAWLPLIP-AYLQPSNGKNQFPYGVSFASAGAGALVGTFPGMV--INLKSQLNNFKKVEKLLRSTLGEAQGKMVISRAVYLFHIGVND-----YQYPFSTNSSIF 190          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GDL5_ARATH (GDSL esterase/lipase At1g23500 OS=Arabidopsis thaliana GN=At1g23500 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 52/171 (30.41%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVI-GAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIIS 671
            A F FGDS++D+GNNN L T ++ +  PYG +F   + TGRF NG    D+I++ +   +    Y  P L+   L  G  FAS G G L++   +   +I +  Q+  F EY  +++ V+   ++   +++ A+ LI+ G ND       + Y     Q+T+  Y   +++
Sbjct:   35 ALFAFGDSILDTGNNNNLNTLSKCNFFPYGRNFIGGKATGRFGNGRVFSDMIAEGLNVKKLLPAYRDPNLSKNDLPTGVCFASGGSG-LDERTARSQGVIWVPDQVKDFKEYIMKLNGVVRDKRKVNAIISNAVYLISAGNNDLA-----ITYPTLMAQYTVSTYTDLLVT 199          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: EXL6_ARATH (GDSL esterase/lipase EXL6 OS=Arabidopsis thaliana GN=EXL6 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 53/163 (32.52%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSP--ELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVI-GAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFT 641
            A F FGDS++D+GNNN+L T  + +  PYG+ F    PTGRF NG    DI+++ + Q +  +P  S    ++ + L  G  FAS G GI +D   + + ++    Q+  F +Y +++  V+   ++ +++V+ A+ LI+ G ND    Y++ P   R +  T
Sbjct:   29 ALFAFGDSVLDTGNNNFLLTLLKGNYWPYGLSFDYKFPTGRFGNGRVFTDIVAEGL-QIKRLVPAYSKIRRISSEDLKTGVCFASGGSGI-DDLTSRTLRVLSAGDQVKDFKDYLKKLRRVVKRKKKVKEIVSNAVFLISEGNNDL--GYFVAPALLRLQSTT 187          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GDL33_ARATH (GDSL esterase/lipase At2g04020 OS=Arabidopsis thaliana GN=At2g04020 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAE-YQRRVSAVIGA-QQARQLVNRALVLITVGGNDFVNNY 602
            AF+V GDSLVD GNNN+L T  RA+ PPYG DF   + TGRFSNG  I D I+        P      +     +  G N+ASAG GI   TG      + + +Q+D F E  ++ +        + R+ +  +L +  +G ND+   Y
Sbjct:   43 AFYVIGDSLVDPGNNNHLPTMIRANYPPYGSDFEGGKATGRFSNGKTIADYIAIYYKLPLVPAYLGLSDDRKDTISTGMNYASAGCGIRRLTGKIAGKCLSLSKQVDLFEETIEKHLKTNFKTPYELREHLAHSLFMTVIGVNDYAFFY 191          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GLIP3_ARATH (GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=GLIP3 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 56/170 (32.94%), Postives = 88/170 (51.76%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYLATTA--RADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYI 665
            A FVFGDSL D+GNNNY+ T +  R++  PYG       PTGR S+G        ++      P P L P     +   G +FASAG G L ++ +  V  I +  QL+ F + ++ + + +G  + +++ +RA+ L  +G ND     Y  P+SA S  F   +  K++
Sbjct:   35 ALFVFGDSLFDAGNNNYINTVSSFRSNIWPYG-QTNFKFPTGRLSDG-------PEKAWLPSIP-PNLQPNNGNNQFTYGVSFASAGAGALAESFLGMV--INLGTQLNNFKDVEKSLRSELGDAETKRVFSRAVYLFHIGAND-----YFYPFSANSSTFKSNSKEKFV 188          
BLAST of FC920341 vs. ExPASy Swiss-Prot
Match: GRIP4_ARATH (GDSL esterase/lipase 4 OS=Arabidopsis thaliana GN=GLIP4 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 53/176 (30.11%), Postives = 89/176 (50.57%), Query Frame = 3
Query:  162 AFFVFGDSLVDSGNNNYL--ATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIR--MFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQF---TLPNYVKYII 668
            A F FGDSL ++GNNNY    ++ R++  PYG       PTGR S+G  + D I++       P P L P  +  +L  G NFA+   G+   T    V  +   +  QL+ F   ++ + + +G  +AR+++++A+ L  +G ND     Y  P+ A +  F   T   ++ ++I
Sbjct:   37 ALFAFGDSLFEAGNNNYFDSISSFRSNFWPYG-KTTFKFPTGRVSDGRIMIDFIAEYAWLPLIP-PNLQPGYSNSQLTYGLNFATTAAGVFAGTFPGSVTNLSKDLGTQLNNFKNVEKTLRSNLGDAEARRVISKAVYLFHIGAND-----YQYPFFANTSTFSNTTKERFIDFVI 205          
The following BLAST results are available for this feature:
BLAST of FC920341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
GLIP6_ARATH5.007e-1836.79GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=... [more]
EXL4_ARATH2.485e-1732.47GDSL esterase/lipase EXL4 OS=Arabidopsis thaliana ... [more]
EXL5_ARATH3.588e-1627.94GDSL esterase/lipase EXL5 OS=Arabidopsis thaliana ... [more]
GLIP1_ARATH4.686e-1633.92GDSL esterase/lipase 1 OS=Arabidopsis thaliana GN=... [more]
GLIP2_ARATH6.121e-1636.65GDSL esterase/lipase 2 OS=Arabidopsis thaliana GN=... [more]
GDL5_ARATH6.121e-1630.41GDSL esterase/lipase At1g23500 OS=Arabidopsis thal... [more]
EXL6_ARATH7.994e-1632.52GDSL esterase/lipase EXL6 OS=Arabidopsis thaliana ... [more]
GDL33_ARATH1.044e-1536.24GDSL esterase/lipase At2g04020 OS=Arabidopsis thal... [more]
GLIP3_ARATH8.838e-1532.94GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=... [more]
GRIP4_ARATH5.362e-1230.11GDSL esterase/lipase 4 OS=Arabidopsis thaliana GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007A11EF RVDevelop1 Citrus clementina cDNA clone C32007A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920341 ID=FC920341; Name=FC920341; organism=Citrus clementina; type=EST; length=671bp
AATCCAAGAAGAGTATATATCCATATATCTAATTAGAGTTTCGAAACAAT
ATGTCAATGGCTATTGCGACTTCATCGGCATCAGTAGCAATGCGTTCTTG
GATGATGATTATTGGCATTGCATTTGCTTTAGGATCAATTGTTCGTCTTG
CTGAGGCTCGAGCTTTCTTCGTGTTTGGCGATTCACTCGTCGACAGCGGC
AACAACAACTACCTCGCCACGACTGCCCGTGCAGACGCGCCGCCTTATGG
GATTGATTTTCCTACTCACCGTCCCACAGGCCGTTTCTCCAATGGCTTCA
ACATCCCTGACATTATCAGTCAGAGAATTGGCCAATCGGAAGCCCCATTG
CCATACTTGAGTCCAGAACTCAATGGACAGAGACTGCTCATTGGTGCCAA
CTTCGCTTCAGCGGGAATTGGAATTCTCAATGACACCGGCATCCAATTTG
TAAACATAATTAGAATGTTCAGACAATTGGATTACTTCGCGGAGTACCAG
CGTCGAGTGAGTGCTGTCATTGGAGCCCAGCAAGCTCGCCAACTTGTAAA
CCGAGCACTAGTACTCATCACTGTCGGTGGCAATGATTTTGTGAATAACT
ATTACTTGGTTCCGTACTCTGCAAGATCTCGCCAATTCACTTTGCCCAAT
TATGTCAAGTATATCATCTCT
back to top