FC920342

Overview
NameFC920342
Unique NameFC920342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_BRAJA (Pyrophosphate-energized proton pump OS=Bradyrhizobium japonicum GN=hppA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 100/237 (42.19%), Postives = 136/237 (57.38%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVV--KNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            G DLVG+VE  IPEDDPRNPA IADNVGDNVGD AGM +DLF +YA ++ A +V+A+I         + M  PL I  I    C+IT++  T   ++   + I  +L K LI + VL  +GIA+V        +T+  FG    V      LF C  VGL    +I ++TEYYT   Y PV+ +A +  TG  TNVI GLA+  ++  +P   I   I V++S A ++GIA+A   M
Sbjct:  191 GGDLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVTAVATMVLAAIFFAKTPILMSMMTLPLAIGGI----CIITSIIGTFFVKLGPSQSIMGALYKGLIATGVLSLIGIAVV-------IYTLIGFGKLDGVDYTGMSLFECGVVGLIVTALIIWITEYYTGTDYRPVKSIAAASVTGHGTNVIQGLAISMEATALPAIVIIAGILVTYSLAGLFGIAIATATM 416          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_XANCP (Pyrophosphate-energized proton pump OS=Xanthomonas campestris pv. campestris GN=hppA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 96/235 (40.85%), Postives = 136/235 (57.87%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG+VE  IPEDDPRNPAVIADNVGDNVGD AGM +DLF +YA +  A +++ S++         ++LYPL++  + I+  +I   F     +VK    I  +L K +I+S VL  +         LP +  +    A   +    L+ C  +GL    +I ++TEYYT   Y PVQ VA +  TG  TN+I GL +  KS  +P+ A+  +I+ +F F  +YGIA+AA  M
Sbjct:  191 GADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFETYAVTVIATMLLGSLTLAETGPH--AVLYPLVLGGVSIVASIIGAAFV----KVKPGGSIMGALYKGVIVSGVLAAIAY-------LPITQALMRENAHGAM---SLYACALIGLVLTGLIVWITEYYTGTQYGPVQHVAAASTTGHGTNIIAGLGISMKSTALPVIAVCAAIWGAFHFGGLYGIAIAATAM 409          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_XANAC (Pyrophosphate-energized proton pump OS=Xanthomonas axonopodis pv. citri GN=hppA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 97/235 (41.28%), Postives = 136/235 (57.87%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG+VE  IPEDDPRNPAVIADNVGDNVGD AGM +DLF +YA +  A +++ S++         ++LYPL++  + I+  ++   F     +VK    I  +L K +I+S VL     A+  W    S       GA        L+ C  +GL    +I ++TEYYT   Y+PVQ VA +  TG  TN+I GL +  KS  +P+ A+  +I+ +F F  +YGIA+AA  M
Sbjct:  191 GADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFETYAVTVIATMLLGSLTLADTGSH--AVLYPLVLGGVSIIASIVGAAFV----KVKDGGSIMGALYKGVIVSGVL----AALAYWPITQSLMRDNIHGAT------ALYACALIGLVLTGLIVWITEYYTGTQYTPVQHVASASTTGHGTNIIAGLGISMKSTALPVIAVCAAIWGAFHFGGLYGIAIAATAM 409          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_RHORT (Pyrophosphate-energized proton pump OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=hppA PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 5.162e-40
Identity = 96/236 (40.68%), Postives = 137/236 (58.05%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVV-KNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG+VE  IPEDDPRNPAVIADNVGDNVGD AGM +DLF +YA +  A +V+ASI   G+    + M YPL I      VC++ ++  T   ++     I  +L +  ++S     VGI + + I +P    I   GA  V+   + LFLC  +GL    ++ +VTEYYT   + PV+ VA +  TG  TNVI GLA+  ++  +P   I  +I  ++  + ++GIA+    M
Sbjct:  189 GADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFETYAVTVVATMVLASIFFAGVPAMTSMMAYPLAIGG----VCILASILGTKFVKLGPKNNIMGALYRGFLVSAGASFVGIILATAI-VPGFGDIQ--GANGVLYSGFDLFLCAVIGLLVTGLLIWVTEYYTGTNFRPVRSVAKASTTGHGTNVIQGLAISMEATALPALIICAAIITTYQLSGLFGIAITVTSM 417          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_FUSNN (Pyrophosphate-energized proton pump OS=Fusobacterium nucleatum subsp. nucleatum GN=hppA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 94/235 (40.00%), Postives = 133/235 (56.60%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG+VE  IPEDDPRNPA IADNVGDNVGD+AGMG+DLF SY  S  A + +A +    ++     +  PLLIS+ GI+  +I TL        K   ++E   +   I   + +     I+ ++GL                +  +F  +  GL AGL+I + T  YT      V  V+D+  TGAAT +I GLA+G +S + P+  IA++I +SF    +YGI++AA+GM
Sbjct:  189 GADLVGKVEAGIPEDDPRNPATIADNVGDNVGDVAGMGADLFESYVGSIIATITLAFL--LPVDDATPYVAAPLLISAFGIISSIIATLTVKTDDGSKVHAKLEMGTR---IAGILTIIASFGIIKYLGL----------------DMGIFYAIVAGLVAGLVIAYFTGVYTDTGRRAVNRVSDAAGTGAATAIIEGLAIGMESTVAPLIVIAIAIIISFKTGGLYGISIAAVGM 402          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA2_METAC (Pyrophosphate-energized proton pump 2 OS=Methanosarcina acetivorans GN=hppA2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.734e-39
Identity = 92/243 (37.86%), Postives = 137/243 (56.38%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA--------AMYGIAVAALGM 707
            GADLVG+VE  IPEDDPRN  VIADNVGDNVGD AGMG+DLF +Y  +S AA+++ S+    I     ++LYPL++ S+ I   +I+  F     E K ++ +   +    IIS +                    + F    ++ + +LF    VG+   +++  +TEYYTS  Y PV+ +A S  TGAATN+I GL++G++S ++P   I + I +S+            +YGIA+AA+ M
Sbjct:  183 GADLVGKVEAGIPEDDPRNAGVIADNVGDNVGDCAGMGADLFETYVVTSLAAMLLGSLI---IGTYENAILYPLVLGSVAIFASIISVFFVKIGKEGKIMQALYKGVGGSAIISLI-------------------AFYFVTNSLMGDIRLFYATVVGIIITVLMVIITEYYTSTDYRPVKTIAASSETGAATNIISGLSIGFESTLVPTVVIVIGILISYFIVGGAADAGIGLYGIAIAAVAM 403          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA2_RHOPA (Pyrophosphate-energized proton pump OS=Rhodopseudomonas palustris GN=hppA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 92/235 (39.15%), Postives = 135/235 (57.45%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG+VE +IPEDDPRNPAVIADNVGDNVGD AGM +DLF +YA +  AA+ + ++     N    + +YPL++  + I+  +I   F   +     +K + P+L K LI++  +  V    V+ + +P         A       +LF    VGL     + +VTEYYT   + PVQ VA +  TG  TN+I GL +  KS   P+  + ++I+ +++ A +YGIA+AA  M
Sbjct:  191 GADLVGKVEASIPEDDPRNPAVIADNVGDNVGDCAGMAADLFETYAVTLIAAMALGAL--LLPNAALAAAVYPLVLGGVSIIASIIGCAF---VKASPGMKNVMPALYKGLIVAGAISLVFFFFVTRMVMPDD-------ALGAGTQMRLFGACVVGLVLTAAMVWVTEYYTGTQFKPVQHVAQASTTGHGTNIIAGLGVSMKSTAWPVIFVCLAIYGAYALAGLYGIAIAATSM 413          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_RHILO (Pyrophosphate-energized proton pump OS=Rhizobium loti GN=hppA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 96/237 (40.51%), Postives = 133/237 (56.12%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWI--GLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            G DLVG+VE  IPEDDPRNPA IADNVGDNVGD AGM +DLF +YA +  A +V+ +I   G      +MLYPL I       C++T++  T   ++ A   I  +L K LI++ +L  VG+A+ + +  G     T+    A  V+    LF+C  +GL    +I  +TEYYT     PV  +A +  TG  TNVI GLA+  +S  +P   I   I  ++  A +YG A+A   M
Sbjct:  191 GGDLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVTVVATMVLGAIFFGGTAVLGAAMLYPLAICG----ACILTSIVGTFFVKLGANGSIMGALYKGLIVTGLLSIVGLAVATSVCFGWGEIGTV----AGMVITGKNLFICGLIGLAVTGLIVVITEYYTGTNKRPVNSIAQASVTGHGTNVIQGLAVSLESTALPAIVIVGGIISTYQLAGLYGTAIAVTTM 419          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_OCHA4 (Pyrophosphate-energized proton pump OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hppA PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 97/237 (40.93%), Postives = 133/237 (56.12%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVS--WIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            G DLVG+VE  IPEDDPRNPA IADNVGDNVGD AGM +DLF +YA +  A +V+ +I   G +   + MLYPL+I       C+IT++  T   ++     I  +L K LI + +L  VG+AI +   +G     T+    A K +    LFLC  +GL    +I  +TEYYT     PV  +A +  TG  TNVI GLA+  +S  +P   I   I  ++  A ++G A+A   M
Sbjct:  195 GGDLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVTVVATMVLGAIFFNGSDILSSVMLYPLMICG----ACVITSIVGTFFVKLGVNGSIMGALYKGLIATGLLSIVGLAIANTLTVGWGEIGTV----AGKSITGTNLFLCGLIGLIVTGLIVVITEYYTGTNKRPVNSIAQASVTGHGTNVIQGLAVSLESTALPAIVIVGGIISTYQLAGLFGTAIAVTAM 423          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA1_RHOPA (Pyrophosphate-energized proton pump OS=Rhodopseudomonas palustris GN=hppA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.310e-38
Identity = 98/239 (41.00%), Postives = 136/239 (56.90%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASI--SSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVK--NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            G DLVG+VE  IPEDDPRNPA IADNVGDNVGD AGM +DLF +YA ++ A +V+A+I   S   +   + M  PL I  I    C++T++  T   ++ A + I  +L K LI + VL  VG+ +V          +  FG    V      LF C  VGL    +I ++TEYYT   + PV+ +A +  TG  TNVI GLA+  +S  +P   I   I +++S A ++GIA+A   M
Sbjct:  191 GGDLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVTAVATMVLAAIFFGSATPDQLQSVMTLPLAIGGI----CILTSIAGTFFVKLGASQSIMGALYKGLIATGVLSLVGVGVV-------IHQLIGFGPLPGVSYTGLALFECGIVGLAVTGLIIWITEYYTGTDFRPVKSIAQASVTGHGTNVIQGLAISMESTALPAIVIIAGILITYSLAGLFGIAIATTTM 418          
The following BLAST results are available for this feature:
BLAST of FC920342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
HPPA_BRAJA1.358e-4042.19Pyrophosphate-energized proton pump OS=Bradyrhizob... [more]
HPPA_XANCP3.952e-4040.85Pyrophosphate-energized proton pump OS=Xanthomonas... [more]
HPPA_XANAC3.952e-4041.28Pyrophosphate-energized proton pump OS=Xanthomonas... [more]
HPPA_RHORT5.162e-4040.68Pyrophosphate-energized proton pump OS=Rhodospiril... [more]
HPPA_FUSNN1.502e-3940.00Pyrophosphate-energized proton pump OS=Fusobacteri... [more]
HPPA2_METAC9.734e-3937.86Pyrophosphate-energized proton pump 2 OS=Methanosa... [more]
HPPA2_RHOPA2.832e-3839.15Pyrophosphate-energized proton pump OS=Rhodopseudo... [more]
HPPA_RHILO3.699e-3840.51Pyrophosphate-energized proton pump OS=Rhizobium l... [more]
HPPA_OCHA43.699e-3840.93Pyrophosphate-energized proton pump OS=Ochrobactru... [more]
HPPA1_RHOPA6.310e-3841.00Pyrophosphate-energized proton pump OS=Rhodopseudo... [more]

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Properties
Property NameValue
Genbank descriptionC32007A12EF RVDevelop1 Citrus clementina cDNA clone C32007A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920342 ID=FC920342; Name=FC920342; organism=Citrus clementina; type=EST; length=709bp
TTGGTGCTGATCTTGTCGGACAGGTTGAGAGAAACATTCCAGAAGATGAC
CCAAGAAACCCAGCTGTCATTGCTGACAATGTTGGTGATAATGTTGGAGA
CATAGCTGGCATGGGTTCTGATCTTTTTGGCTCCTATGCTGAATCATCCT
GTGCTGCTCTTGTCGTTGCATCCATCTCATCTTTTGGAATCAACCACGAG
TTCACTAGCATGCTGTATCCTCTGCTCATCAGTTCTATAGGCATCCTTGT
TTGTCTGATCACAACGCTCTTTGCTACAGATATCTTTGAAGTCAAGGCTG
TTAAGGAAATTGAACCATCATTGAAGAAACAGCTTATCATCTCTACTGTT
CTTATGACTGTTGGAATTGCAATTGTTAGCTGGATAGGCTTGCCATCTTC
CTTCACAATTTACAATTTTGGAGCTCAGAAGGTTGTGAAGAACTGGCAAC
TATTTTTATGTGTGGCTGTTGGTCTTTGGGCTGGACTTATCATTGGGTTT
GTGACTGAGTATTACACTAGCAATGCATACAGCCCTGTGCAAGATGTTGC
CGATTCCTGCAGAACAGGAGCTGCCACCAATGTTATCTTTGGCCTTGCCT
TGGGATACAAATCTGTCATCATACCAATTTTTGCCATTGCAGTCAGCATT
TTTGTTAGTTTTAGTTTTGCTGCTATGTATGGTATTGCTGTGGCTGCCCT
TGGAATGCT
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