FC920342

Overview
NameFC920342
Unique NameFC920342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_STRAW (Pyrophosphate-energized proton pump OS=Streptomyces avermitilis GN=hppA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.471e-31
Identity = 84/247 (34.01%), Postives = 137/247 (55.47%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSF------TIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA------AMYGIAVAALGM 707
            GADLVG+VE+ IPEDDPRN A IADNVGDNVGD AGM +DLF SYA +  AAL++   ++FG     + + +PL++ +IG+L  +I  +FA  +   +A +    ++ +   +S V     +A+  ++ LP  +      T     A+         + VA+G+    +I  +T Y+T     PV+D+  S  TGAAT V+ G+++G +S +     I + ++ +F         A++ +A+A  G+
Sbjct:  227 GADLVGKVEQGIPEDDPRNAATIADNVGDNVGDCAGMAADLFESYAVTLVAALILGK-AAFG----DSGLAFPLIVPAIGVLTAMI-GIFA--VAPRRADRSGMSAINRGFFVSAVFSLALVAVAVYVYLPGKYADLDGVTDVAIRAKDGDPRILAMVAVAIGIVLAALIQQLTGYFTETTRRPVRDIGKSSLTGAATVVLAGISVGLESAVYTALLIGLGVYGAFLLGGTSIMLALFAVALAGTGL 465          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: AVPX_ARATH (Pyrophosphate-energized membrane proton pump 3 OS=Arabidopsis thaliana GN=AVPL2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.324e-30
Identity = 83/251 (33.07%), Postives = 133/251 (52.99%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTS--MLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSF--------------SFAAMYGIAVAALGM 707
            GADLVG+VE  IPEDDPRNPAVIAD VGDNVGD A  G+DLF S A    +A+++    +     E  S  +L+PL++ S  +++  I  L             +E  +   ++     +T+ +A++++ G  + + +Y   A     N+  F+C  VG+    +  +++ YYT   Y PV+ +A +  TG  TN+I G++LG +S  +P+  I+V+I  +F                  ++G AVA +GM
Sbjct:  278 GADLVGKVEHGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAQKCKIEDPSGFILFPLVVHSFDLVISSIGILSIKGTRNASVKSPVEDPM--VVLQKGYSLTIILAVLTF-GASTRWLLYTEQAPSAWLNF--FMCGLVGIITAYVFVWISRYYTDYKYEPVRTLALASSTGHGTNIIAGVSLGLESTALPVLVISVAIISAFWLGNTSGLIDEKGNPTGGLFGTAVATMGM 523          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: AVP2_ARATH (Pyrophosphate-energized membrane proton pump 2 OS=Arabidopsis thaliana GN=AVPL1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 82/251 (32.67%), Postives = 135/251 (53.78%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTS--MLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSF--------------SFAAMYGIAVAALGM 707
            GADLVG+VE+ IPEDDPRNPAVIAD VGDNVGD A  G+DLF S A    +A+++    +     E  S  +L+PL++ S  +++  I  L      +      +E  +   ++     +T+ +A++++ G  + + +Y   A     N+   LC  VG+    I  ++++YYT   + PV+ +A +  TG  TN+I G++LG +S  +P+  I+V+I  ++                  ++G AVA +GM
Sbjct:  278 GADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAKKCKIEDPSGFILFPLVVHSFDLIISSIGILSIKGTRDASVKSPVEDPM--AVLQKGYSLTIILAVITF-GASTRWLLYTEQAPSAWFNFA--LCGLVGIITAYIFVWISKYYTDYKHEPVRTLALASSTGHGTNIIAGVSLGLESTALPVLTISVAIISAYWLGNTSGLVDENGIPTGGLFGTAVATMGM 523          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_PYRAE (Pyrophosphate-energized proton pump OS=Pyrobaculum aerophilum GN=hppA PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 81/238 (34.03%), Postives = 125/238 (52.52%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKV----VKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALG 704
            GADLVG+VE  IPEDDPRNP VIADNVGDNVGD+AGM +D++ SY  +  AA+ +A+I   G+  +F   +  +L +++     L+ T    ++ +   VK               L ++ +AI + IGL  S  ++  GA  +     K   L    ++G     +I  +T+YYTS  Y PV+ +A+  +   AT +I G  +G  S  IP+ A+ V++         Y + V+  G
Sbjct:  196 GADLVGKVEAGIPEDDPRNPGVIADNVGDNVGDVAGMAADVYESYIVTVTAAIFLAAI--LGLPTQFIEAI--ILFAAL----ALVATFAGVNLLKTTGVKH-------------PLSSISLAIYATIGL--SVVLFFIGAFTLGLDSTKALALAATTSLGAVIAPLIVKITDYYTSYNYGPVRKIAEQAKISPATVIITGYGVGLMSA-IPVIAVIVAVLGISYMIGYYTVPVSGFG 409          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA2_MYCDI (Pyrophosphate-energized proton pump 2 (Fragment) OS=Mycoplana dimorpha GN=hppA2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 60/187 (32.09%), Postives = 91/187 (48.66%), Query Frame = 3
Query:  159 LVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKV----VKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            +V+A+I   G     T+M YPL I +     C+IT++  T   ++     I  +L K LI++  L  +G+      G  +SFTI       V    V+   LF+C  +GL    +I  +TEYYT     PV  +A +  TG  TNVI GLA+  +S  +P   I   I  ++  A ++G A+A   M
Sbjct:    1 MVLAAIFFGGTPILATAMAYPLAICA----ACVITSIIGTFFVKLGTNNSIMGALYKGLIVTGALSILGL------GAATSFTIGWGSIGTVGGIEVRGGNLFVCGLIGLVVTALIVVITEYYTGTNKRPVNSIAQASVTGHGTNVIQGLAVSLESTALPAIVIVGGIIATYQLAGLFGTAIAVTAM 177          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA2_RHILT (Pyrophosphate-energized proton pump 2 (Fragment) OS=Rhizobium leguminosarum bv. trifolii GN=hppA2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 50/170 (29.41%), Postives = 81/170 (47.65%), Query Frame = 3
Query:  204 TSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSW--IGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            ++M+YPL I       C++T++  T   ++     I  +L K LI + V    G+A+ ++  +G  +  T+    A   +    LF C  VGL    +I  +TEYYT     PV  +A +  TG  TNVI GLA+  +S  +P   I   I  ++    ++G  +A   M
Sbjct:   13 SAMVYPLAICG----ACILTSIAGTFFVKLGTNNSIMGALYKGLIATGVFSVAGLAVATYATVGWGTIGTV----AGMEITGTNLFFCGLVGLVVTALIVVITEYYTGTNKRPVNSIAQASVTGHGTNVIQGLAVSLESTALPAIVIVGGIIGTYQLGGLFGTGIAVTAM 174          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_CHLTE (Pyrophosphate-energized proton pump OS=Chlorobium tepidum GN=hppA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 64/229 (27.95%), Postives = 109/229 (47.60%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCA--ALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATD-IFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAD-SCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAM 677
            G+DL+ ++   I EDD RNP VIAD  GDN GD  G  +D F +Y  +  A  + ++ +I    I     S+L  +    + ++V    + +  D + ++K     E + +K LI    L ++   ++++I   S   I   G   +   W+L   +  G  AG +I  + + +TS   + V++V   S   GAA N++ GL  G  S      AI V +  +F F+ +
Sbjct:  189 GSDLM-KIVFKIKEDDARNPGVIADCTGDNAGDSVGPTADGFETYGVTGVALISFILLAIKDPSIQ---VSLLVWIFAMRLVMIVASAVSYWVNDALAKMKYGNADEMNFEKPLITLVWLTSIVSIVLTYIA--SYMLIAQLGDGTMW--WKLASIITCGTIAGALIPELVDRFTSTECAFVRNVVQCSKEGGAALNILSGLVAGNFSAYWMGLAIIVLMGAAFGFSTL 409          
The following BLAST results are available for this feature:
BLAST of FC920342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
HPPA_STRAW7.471e-3134.01Pyrophosphate-energized proton pump OS=Streptomyce... [more]
AVPX_ARATH6.324e-3033.07Pyrophosphate-energized membrane proton pump 3 OS=... [more]
AVP2_ARATH2.403e-2932.67Pyrophosphate-energized membrane proton pump 2 OS=... [more]
HPPA_PYRAE1.116e-2634.03Pyrophosphate-energized proton pump OS=Pyrobaculum... [more]
HPPA2_MYCDI3.980e-1632.09Pyrophosphate-energized proton pump 2 (Fragment) O... [more]
HPPA2_RHILT1.084e-1329.41Pyrophosphate-energized proton pump 2 (Fragment) O... [more]
HPPA_CHLTE8.587e-1127.95Pyrophosphate-energized proton pump OS=Chlorobium ... [more]

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Properties
Property NameValue
Genbank descriptionC32007A12EF RVDevelop1 Citrus clementina cDNA clone C32007A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920342 ID=FC920342; Name=FC920342; organism=Citrus clementina; type=EST; length=709bp
TTGGTGCTGATCTTGTCGGACAGGTTGAGAGAAACATTCCAGAAGATGAC
CCAAGAAACCCAGCTGTCATTGCTGACAATGTTGGTGATAATGTTGGAGA
CATAGCTGGCATGGGTTCTGATCTTTTTGGCTCCTATGCTGAATCATCCT
GTGCTGCTCTTGTCGTTGCATCCATCTCATCTTTTGGAATCAACCACGAG
TTCACTAGCATGCTGTATCCTCTGCTCATCAGTTCTATAGGCATCCTTGT
TTGTCTGATCACAACGCTCTTTGCTACAGATATCTTTGAAGTCAAGGCTG
TTAAGGAAATTGAACCATCATTGAAGAAACAGCTTATCATCTCTACTGTT
CTTATGACTGTTGGAATTGCAATTGTTAGCTGGATAGGCTTGCCATCTTC
CTTCACAATTTACAATTTTGGAGCTCAGAAGGTTGTGAAGAACTGGCAAC
TATTTTTATGTGTGGCTGTTGGTCTTTGGGCTGGACTTATCATTGGGTTT
GTGACTGAGTATTACACTAGCAATGCATACAGCCCTGTGCAAGATGTTGC
CGATTCCTGCAGAACAGGAGCTGCCACCAATGTTATCTTTGGCCTTGCCT
TGGGATACAAATCTGTCATCATACCAATTTTTGCCATTGCAGTCAGCATT
TTTGTTAGTTTTAGTTTTGCTGCTATGTATGGTATTGCTGTGGCTGCCCT
TGGAATGCT
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