FC920347

Overview
NameFC920347
Unique NameFC920347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:4..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 52/157 (33.12%), Postives = 74/157 (47.13%), Query Frame = 2
Query:  221 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV*LSFS 691
            E+   +F +A+ AEF+A            + + S               IL IA AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+VAQ +GAI+G G++         R     N L +  + G  +  E+I TF L    FS
Sbjct:    4 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPT-----------ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPG-NARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFS 148          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 2
Query:  359 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKA-------FQKSYYTRYGGGANELADGYSTGVGLAAEIIGTF 667
            G+G+LG+++AFG  +  + Y   GISGGH NPAV+ GL +A +V     V Y++AQ  GAI    ++         FQ   +   G G +    GYS    L  E++ TF
Sbjct:   33 GIGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHS-PGGYSLTAALVTEVVMTF 141          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 52/156 (33.33%), Postives = 77/156 (49.36%), Query Frame = 2
Query:  221 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGL----AAEIIGTFVLV 676
            E T+    +A +AEFI+            + +   T+        +G+    +A AFG  +FV V   A ISGGH+NPAVTFG F+   ++L+R ++Y +AQ LG++    ++K           GG    A G S GVG+      EI+ TF LV
Sbjct:   13 EATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTP--SGLVAAAVAHAFG--LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFAT--------GGLAVPAFGLSAGVGVLNAFVFEIVMTFGLV 156          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 45/147 (30.61%), Postives = 71/147 (48.30%), Query Frame = 2
Query:  236 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 676
            + +R L+AEF+             +G+     P           +  IA+ FG ++  L      +SG HINPAVT GL +   +S+++   Y+V+QC+GAI+G  L+KA   S     G G   +    + G G+  E + TF+LV
Sbjct:   21 NIWRMLVAEFLGTFFLVSIGIGSTMGWGGDYAPT----------MTQIAFTFGLVVATLAQAFGHVSGCHINPAVTIGLMITADISILKGAFYIVSQCVGAIAGAALIKAATPSDVIG-GLGVTGIDPRLTAGQGVMIEALITFILV 156          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 50/157 (31.85%), Postives = 75/157 (47.77%), Query Frame = 2
Query:  221 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV*LSFS 691
            E+   +F++A+ AEF+A            + + S               IL I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+ AQ +GAI+G G++  +      R     N L +  + G  +  E+I TF L    FS
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL-YWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCIFS 148          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 2
Query:  245 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLV 676
            RA +AEFI+            I Y   T  A         G++ IA   G  +FV V   A ISGGH+NPAVTFGL +  +++++  V Y +AQ LG+ +   L+K     Y T  GG A   + +A G  +  G+  EII TF LV
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDA----ALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK-----YVT--GGLAVPTHSVAAGLGSIEGVVMEIIITFALV 154          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  353 CAGVGI------LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 676
            C GV I      + IA  FG +I  +V C   +SG HINPAVT GL +   +S+++A+ Y++ QC+GAI+G  ++K    + + R       LA G +  +G   E   TFVL+
Sbjct:   47 CTGVQISEGDVVVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEF-RGTLCMTSLAPGVTPPMGFLVEACITFVLI 159          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  359 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSTGVGLAAEIIGT--FVLV 676
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS   GL  EII T  F+++
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIII 146          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  359 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSTGVGLAAEIIGT--FVLV 676
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS   GL  EII T  F+++
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIII 146          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  359 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSTGVGLAAEIIGT--FVLV 676
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS   GL  EII T  F+++
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIII 146          
The following BLAST results are available for this feature:
BLAST of FC920347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
AQP5_PIG9.024e-1333.12Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQPZ2_RHIME2.010e-1236.36Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]
TIP11_ARATH2.626e-1233.33Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
AQP_AEDAE2.626e-1230.61Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]
AQP5_RAT2.626e-1231.85Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
TIP21_ARATH3.429e-1236.73Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
AQP_CICVR3.429e-1236.84Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQPZ_BRUME3.429e-1241.23Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
AQPZ_BRUAB3.429e-1241.23Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]
AQPZ_BRUA23.429e-1241.23Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]

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Properties
Property NameValue
Genbank descriptionC32007B06EF RVDevelop1 Citrus clementina cDNA clone C32007B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920347 ID=FC920347; Name=FC920347; organism=Citrus clementina; type=EST; length=702bp
GACCAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAAGGC
TTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTT
TCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGT
GGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGG
AGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCC
TTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTT
GACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACG
GCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCATG
ATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAA
CCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCC
GTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGTT
GGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGG
GGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGCCG
AGATCATCGGCACCTTTGTCTTGGTTTAACTGTCTTTCTCGCCACTGATC
CC
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