FC920347

Overview
NameFC920347
Unique NameFC920347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:4..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 49/157 (31.21%), Postives = 75/157 (47.77%), Query Frame = 2
Query:  221 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV*LSFS 691
            E+   +F++A+ AEF+A            + + S               IL I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RA+ Y+ AQ +GAI+G G++         R     N L++  + G  +  E+I TF L    FS
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPG-NARGNLAVNALSNNTTPGKAVVVELILTFQLALCIFS 148          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 52/152 (34.21%), Postives = 71/152 (46.71%), Query Frame = 2
Query:  221 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 676
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ YMVAQ LGA++G  ++ +       R     N L  G S G     EI  T   V
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPGVSVGQATIVEIFLTLQFV 142          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 53/149 (35.57%), Postives = 70/149 (46.98%), Query Frame = 2
Query:  245 RALIAEFIAXXXXXXXXXXXXIGYKSQT-----DPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 676
            +A +AEFI+            I Y   T     DPA         G++ +A   G  +FV V   A ISGGH+NPAVTFGL L  +++++  V Y +AQ LGAI G  LV+         +G        G     G+  EII TF LV
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPA---------GLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHG------LSGVGAFEGVVMEIIVTFGLV 153          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 51/152 (33.55%), Postives = 71/152 (46.71%), Query Frame = 2
Query:  221 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 676
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ YM AQ LGA++G  ++ +   +   R     N L  G S G     EI  T   V
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPA-AVRGNLALNTLHPGVSLGQATTVEIFLTLQFV 142          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 36/109 (33.03%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  359 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV-------KAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGT 664
            G+G+LG+A+AFG  +  + +    ISG H+NPAV+FGL +  +      + Y++AQ +GAI   G++         F+ S      G A+    GY+ G G  +E++ T
Sbjct:   34 GIGVLGVAFAFGLTVLTMAFAIGHISGCHLNPAVSFGLVVGGRFPAKELLPYVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMT 142          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 50/148 (33.78%), Postives = 73/148 (49.32%), Query Frame = 2
Query:  221 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGT 664
            EL   SF+RA++AEF+             +G   +  P  +       G+LG A AFG     LV     +SGGHINPA+T    LA ++SL RA+ Y++AQ LGA++G G++     +   R   G + L      G G   E++ T
Sbjct:    3 ELRSSSFWRAILAEFLGSLLYTLLG----LGASLRWAPGPH-------GVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPA-AVRGTLGLSALHPSVGPGQGTVVELLLT 138          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 53/149 (35.57%), Postives = 68/149 (45.64%), Query Frame = 2
Query:  245 RALIAEFIAXXXXXXXXXXXXIGYKSQT-----DPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 676
            +A +AEFIA            I Y   T     DPA         G++ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  ++Y VAQ LGA      V  F   Y T           G S   G+  EI+ TF LV
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPA---------GLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGA-----SVACFLLQYVTHGQAIPTHGVSGISEIEGVVMEIVITFALV 153          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 52/156 (33.33%), Postives = 75/156 (48.08%), Query Frame = 2
Query:  221 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLV 676
            EL+     +A +AEFI+            + +   TD           G++  + A    +FV V   A ISGGH+NPAVTFG F+   +SL++A++Y VAQ LG++    L+K           GGA   A   S GVG    +  E++ TF LV
Sbjct:   13 ELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGG----AATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIAT--------GGAALGAFSLSAGVGAMNAVVLEMVMTFGLV 156          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 51/152 (33.55%), Postives = 71/152 (46.71%), Query Frame = 2
Query:  221 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 676
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ Y+VAQ LGA++G  ++ +       R     N L  G S G     EI  T   V
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPGVSVGQATIVEIFLTLQFV 142          
BLAST of FC920347 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 52/153 (33.99%), Postives = 75/153 (49.02%), Query Frame = 2
Query:  221 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAG-VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLV 676
            E T     +A +AEFI+            I Y   T+     DG A   G++  + A    +FV V   A ISGGH+NPAV FG F+   ++L+R ++Y++AQ LG+I    L+     S    +G     L++G   G  L  EI+ TF LV
Sbjct:   13 EATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTN-----DGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLV 154          
The following BLAST results are available for this feature:
BLAST of FC920347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
AQP5_MOUSE3.429e-1231.21Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
MIP_BOVIN5.849e-1234.21Lens fiber major intrinsic protein OS=Bos taurus G... [more]
TIP22_ORYSJ7.639e-1235.57Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
MIP_RABIT7.639e-1233.55Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQPZ_PSEPK7.639e-1233.03Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
MIP_CHICK9.977e-1233.78Lens fiber major intrinsic protein OS=Gallus gallu... [more]
TIP23_MAIZE1.303e-1135.57Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP12_MAIZE1.303e-1133.33Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
MIP_SHEEP1.303e-1133.55Lens fiber major intrinsic protein OS=Ovis aries G... [more]
TIP1_MEDSA1.702e-1133.99Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32007B06EF RVDevelop1 Citrus clementina cDNA clone C32007B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920347 ID=FC920347; Name=FC920347; organism=Citrus clementina; type=EST; length=702bp
GACCAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAAGGC
TTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTT
TCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGT
GGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGG
AGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCC
TTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTT
GACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACG
GCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCATG
ATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAA
CCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCC
GTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGTT
GGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGG
GGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGCCG
AGATCATCGGCACCTTTGTCTTGGTTTAACTGTCTTTCTCGCCACTGATC
CC
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