FC920352

Overview
NameFC920352
Unique NameFC920352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5984 contig Ccv1_Contig5984:81..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920352 vs. ExPASy Swiss-Prot
Match: P2C25_ORYSJ (Probable protein phosphatase 2C 25 OS=Oryza sativa subsp. japonica GN=Os02g0685600 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 43/98 (43.88%), Postives = 54/98 (55.10%), Query Frame = 3 
Query:  411 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQ------EGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDSHGGPE 686
            M S L+    AC  P+  RY  T  D  G        +GLLW +D G+H  GEFS AVVQAN  LED SQ+E+G  +        TF+G+YD HGG +
Sbjct:    1 MFSWLLRIASACLGPAR-RYARTRKDEDGGDNGGGVADGLLWSRDLGRHAAGEFSFAVVQANEALEDHSQVETGSAA--------TFVGVYDGHGGAD 89
The following BLAST results are available for this feature:
BLAST of FC920352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
P2C25_ORYSJ3.217e-1343.88Probable protein phosphatase 2C 25 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007C01EF RVDevelop1 Citrus clementina cDNA clone C32007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920352 ID=FC920352; Name=FC920352; organism=Citrus clementina; type=EST; length=721bp
CCCAGGGACAATTGACACTCTCATTCACAGCTCTTTTATTTCTTTATAAT
CATTTCATTTTTATCTCTCTATCTTCCTCTGTGTCATCTCTTTTGTTTTT
TTTTTCATTCAAATTAAAAATTCAGTTTTTATAGAAAAGATAGAAAAAAA
ATCACGAAGCTTTGAAGTAAACAGAAGCTACCGTGTGATTTGGTGGATCT
ATAGATCAAACGGTGTTAAACCCTTGCATGTATTGCTCTGTTTCATTTAG
ATCTCCATCGTTTTCATCACTTTAGCTGACGGGAAACTCTGCAACCAGCT
TTATTTTTTGTCGTGAAAGAATTCTGGGTGGGATTTTTATTAGGAATTGT
ATTTGCATCCAATTCTGGATGTGGAAGAATAGGAGGCTGTTGGCTGAGGT
GAGATGAGGGATGTTATCAAGGTTGATGAACTTTCTGAGGGCCTGCTGGC
GGCCGTCCTCGGACCGATATGTCCATACGAGTGCGGATACAGCAGGCCGG
CAAGAGGGGCTACTTTGGTACAAAGACAATGGGCAACACATAAATGGTGA
ATTCTCTATGGCCGTTGTTCAGGCTAACAATTTGCTTGAGGACCAGAGCC
AGATTGAGTCTGGCCCCTTGAGCACTCTTGAGTCTGGTCCTTATGGCACT
TTTATTGGTATCTATGATAGCCATGGCGGGCCTGAGACTCACGATACATC
ATGATCACTGGTTCAGCATCT
back to top