FC920356

Overview
NameFC920356
Unique NameFC920356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8083 contig Ccv1_Contig8083:80..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920356 vs. ExPASy Swiss-Prot
Match: FL3H_DIACA (Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthus caryophyllus GN=FHT PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14
Identity = 58/198 (29.29%), Postives = 88/198 (44.44%), Query Frame = 1
Query:  142 DLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENAKGVSYISNIDLFHSKAASWRDTLQIRLGLTEPE----LEEVPEICRKEAVEWNHHVKQXXXXXXXXXXXXXXXKTDRLKEKTLLEGRMMVGHYYPYCPQPDLTVGITSHTDPG 723
            D RPK      S+ +P I L+G+D +  R  I  KI  A  + G FQVV+HG+G +++  M R  + F   P E K         KG  +I +  L       WR+ +      T         + PE   K   E+++ +                 + + L +  +   + +V +YYP CPQPDLT+G+  HTDPG
Sbjct:   27 DERPKVAYNEFSNDIPVISLAGIDGEK-RGEICRKIVEACEDWGIFQVVDHGVGDDLIADMTRLAREFFALPAEEKLRFDMSGGKKG-GFIVSSHLQGEVVQDWREIVTYFSYPTNSRDYTRWPDKPEGWIKVTEEYSNKLMTLACTLLGVLSEAMGLELEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPG 222          
BLAST of FC920356 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 55/202 (27.23%), Postives = 90/202 (44.55%), Query Frame = 1
Query:  142 DLRPKSKTRPVSDVVPTIDLSGVDS-DDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENAKGVSYISNIDLFHSKAASWRDTLQIRLGLTEP-------ELEEVPEICRKEAVEWNHHVKQXXXXXXXXXXXXXXXKTDRLKEKTLLEGRMMVGHYYPYCPQPDLTVGITSHTDPG 723
            D RPK      S+ +P I L+G+D  +  R  I +KI  A  + G FQ+V+HG+  E++  M    + F   P E K         KG   +S+    H +  + +D  +I    + P          + PE  R+   +++  +                  T+ L +  +   + +V ++YP CPQPDLT+G+  HTDPG
Sbjct:   25 DERPKVAYNDFSNEIPIISLAGIDEVEGRRGEICKKIVAACEDWGIFQIVDHGVDAELISEMTGLAREFFALPSEEKLRFDMSGGKKGGFIVSS----HLQGEAVQDWREIVTYFSYPIRHRDYSRWPDKPEAWREVTKKYSDELMGLACKLLGVLSEAMGLDTEALTKACVDMDQKVVVNFYPKCPQPDLTLGLKRHTDPG 222          
BLAST of FC920356 vs. ExPASy Swiss-Prot
Match: FL3H_CALCH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 54/201 (26.87%), Postives = 87/201 (43.28%), Query Frame = 1
Query:  142 DLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENAKGVSYISNIDLFHSKAASWRDTLQIRLGLTEP-------ELEEVPEICRKEAVEWNHHVKQXXXXXXXXXXXXXXXKTDRLKEKTLLEGRMMVGHYYPYCPQPDLTVGITSHTDPG 723
            D RPK      S+ +P I L+G+D    R  I ++I  A  + G FQVV+HG+  ++L  M    + F   P + K         KG   +S+    H +  + +D  +I    + P          + P   R    E++  +                 + + L +  +   + +V +YYP CPQPDLT+G+  HTDPG
Sbjct:   24 DERPKVPYNTFSNEIPVISLAGIDGCR-RAEICDEIVKACEDWGIFQVVDHGVDTKLLSDMTGLARDFFHLPTQEKLRFDMTGGKKGGFIVSS----HLQGEAVQDWREIVTYFSYPIKARDYSRWPDKPNEWRAVTEEYSKVLMGLACKLLEVLSEAMGLEKEALTKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPG 219          
BLAST of FC920356 vs. ExPASy Swiss-Prot
Match: FL3H_VITVI (Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis vinifera GN=F3H PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 57/204 (27.94%), Postives = 85/204 (41.67%), Query Frame = 1
Query:  142 DLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVE---KIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENAKGVSYISNIDLFHSKAASWRDTLQIRLGLTEP-------ELEEVPEICRKEAVEWNHHVKQXXXXXXXXXXXXXXXKTDRLKEKTLLEGRMMVGHYYPYCPQPDLTVGITSHTDPG 723
            D RPK      S+ +P I L+  +S  L   + E   KI  A  + G FQVVNHG+   ++  M R  + F   PPE           KG   +S+    H +  + +D  +I    + P          + PE  R    E++  +                   D L    +   + +V ++YP CPQPDLT+G+  HTDPG
Sbjct:   24 DERPKVAYNDFSNEIPVISLTK-ESMKLAAVVDEICRKIVEACEDWGIFQVVNHGVDSNLISEMTRLAREFFALPPEENVRFDMSGGKKGGFIVSS----HLQGEAVQDWREIVTYFSYPLRTRDYSRWPDKPEGWRSVTQEYSEKLMGLACKLLEVLSEAMDLDKDALTNACVDMDQKVVVNFYPQCPQPDLTLGLKRHTDPG 222          
The following BLAST results are available for this feature:
BLAST of FC920356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
FL3H_DIACA1.327e-1429.29Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthu... [more]
FL3H_MALDO2.264e-1427.23Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
FL3H_CALCH4.720e-1226.87Naringenin,2-oxoglutarate 3-dioxygenase OS=Callist... [more]
FL3H_VITVI8.051e-1227.94Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis v... [more]

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Properties
Property NameValue
Genbank descriptionC32007C05EF RVDevelop1 Citrus clementina cDNA clone C32007C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920356 ID=FC920356; Name=FC920356; organism=Citrus clementina; type=EST; length=725bp
ACAATCATGAGCCTAGAATCATACGACAGGGCCAAAGAAGTGAAACGATT
CGACGAGCCCAAAGTCGGGGTCAAAGGTTTAGTTGACTTGGGCGTCACCG
CCATCCCCCGCTTTTTCATCCACCCACCCGCCACTCTTGCCGATCTCAGA
CCCAAGTCAAAGACCCGGCCCGTCTCTGATGTAGTCCCCACCATCGATTT
ATCGGGCGTTGACTCGGACGATCTGCGGCCGACGATTGTGGAAAAGATAG
CATGTGCCTCGCGGGAGCTGGGGTTCTTTCAGGTTGTGAATCACGGCATC
GGAGTTGAGGTCTTGGAGCGTATGGTTCGGGCCATTAAAGGGTTTCATGA
ACAGCCGCCGGAGATCAAGGCGCCGGTGTATCGTAGGGAGAACGCCAAAG
GCGTGTCTTACATTTCCAACATCGATTTGTTTCACTCTAAAGCTGCCAGC
TGGAGGGACACACTGCAGATAAGGCTAGGTCTGACGGAACCAGAGCTTGA
AGAAGTTCCTGAAATATGTAGGAAAGAGGCAGTCGAGTGGAACCACCATG
TAAAACAGCTCGGAGAGCTTTTGTTTGGGCTGCTGTGTGAAGGTTTGGGG
TTGAAAACCGATAGGTTGAAGGAAAAGACCCTTCTGGAAGGGAGGATGAT
GGTGGGCCATTATTATCCCTACTGTCCGCAGCCTGATCTGACAGTGGGGA
TCACATCTCATACTGATCCAGGCCA
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