FC920358

Overview
NameFC920358
Unique NameFC920358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHIDS (Chaperone protein htpG OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=htpG PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.792e-43
Identity = 93/187 (49.73%), Postives = 132/187 (70.59%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M   ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF SL++    +G  EL +R+  DK  +TLTI D+G+GMT+ +++++LGTIA+SGTK F+E+L      D  +IGQFGVGFYSA++VA++V V T+      +    WES   G +TV  D++ E   RGT++TL+L+E +
Sbjct:    1 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRSLSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVA-DITKE--DRGTEITLHLREGE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHEFN (Chaperone protein htpG OS=Shewanella frigidimarina (strain NCIMB 400) GN=htpG PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.792e-43
Identity = 90/187 (48.13%), Postives = 131/187 (70.05%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LTD +  +G  +L +R+  +K   T+TI D+GIGMT+  ++ +LGTIA+SGTKEF   L  +A  D  +IGQFGVGFYSA++VA++V V T+   H  +E  +WES+  GSF V      E   RGT++ L+L++++
Sbjct:    1 MSQQETHGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTDDTLYEGNGDLRVRVSANKEKGTVTISDNGIGMTRDSVIEHLGTIAKSGTKEFFSNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHAANEGVLWESEGEGSFNVESITKNE---RGTEIVLHLRDEE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB9 (Chaperone protein htpG OS=Shewanella baltica (strain OS195) GN=htpG PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.792e-43
Identity = 89/187 (47.59%), Postives = 132/187 (70.59%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +G  EL +RI  DK   T+TI D+G+GMT+  ++ +LGTIA+SGT +F + L  ++  D  +IGQFGVGFYSA++VA++V V T+   H  DE  +WES+  G+FTV          RGT++TL+L++++
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTADFFKNLSGESSKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTITKA---SRGTEITLHLRDEE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB8 (Chaperone protein htpG OS=Shewanella baltica (strain OS185) GN=htpG PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.792e-43
Identity = 89/187 (47.59%), Postives = 132/187 (70.59%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +G  EL +RI  DK   T+TI D+G+GMT+  ++ +LGTIA+SGT +F + L  ++  D  +IGQFGVGFYSA++VA++V V T+   H  DE  +WES+  G+FTV          RGT++TL+L++++
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTADFFKNLSGESSKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTITKA---SRGTEITLHLRDEE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB5 (Chaperone protein htpG OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=htpG PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.792e-43
Identity = 89/187 (47.59%), Postives = 132/187 (70.59%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +G  EL +RI  DK   T+TI D+G+GMT+  ++ +LGTIA+SGT +F + L  ++  D  +IGQFGVGFYSA++VA++V V T+   H  DE  +WES+  G+FTV          RGT++TL+L++++
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTADFFKNLSGESSKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTITKA---SRGTEITLHLRDEE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_AERHH (Chaperone protein htpG OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=htpG PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.792e-43
Identity = 94/183 (51.37%), Postives = 132/183 (72.13%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQA--GADVSMIGQFGVGFYSAYLVAERVVVTTK--HNDDEQYI-WESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            ET  FQ E+ QLLSL+ ++ YSNKE+FLRELISN+SDA DK+RF++L+D S  +   +L +R++ DK N+TLTI D+GIGMT+  ++ +LGTIA+SGT EF + L    G D  +IGQFGVGFYSA++VA++V V ++      EQ + WES+  GSFTV  DV+    GRGT + L+L+ ++
Sbjct:    8 ETHGFQTEVKQLLSLMAHSLYSNKEVFLRELISNASDAADKLRFKALSDASLFENDGQLRVRLVVDKENRTLTISDNGIGMTRDQVIEHLGTIAKSGTAEFFKNLSGDQGRDSQLIGQFGVGFYSAFIVADKVTVVSRAAGTAPEQGVQWESEGEGSFTVA-DVT--KAGRGTDVILHLRAEE 187          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_NITEC (Chaperone protein htpG OS=Nitrosomonas eutropha (strain C91) GN=htpG PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.279e-42
Identity = 90/185 (48.65%), Postives = 132/185 (71.35%), Query Frame = 1
Query:  121 DTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTKH---NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            + E   FQAE  QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE L+D +  +  P+L IRI  DK  +T+TI D+GIGM++ ++++N+GTIA+SGT+EF+++L      D ++IGQFGVGFYSA++VA++V +TT+      +    WES   G +T+    + E   RGT++ L+L+ED+
Sbjct:    6 NVEHLNFQAEAKQLLRLMIHSLYSNKEIFLRELISNASDAADKLRFEGLSDTALYESDPDLKIRIAYDKEARTITISDNGIGMSRQEVIDNIGTIAKSGTREFIDSLTGDQARDANLIGQFGVGFYSAFIVADKVTLTTRRAGLTTEHGVRWESSGEGEYTLE---TVEKRDRGTEVVLHLREDE 187          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJR (Chaperone protein htpG OS=Campylobacter jejuni (strain RM1221) GN=htpG PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.279e-42
Identity = 99/179 (55.31%), Postives = 129/179 (72.07%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDK--SKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D     L  +P++ I+I  DK  KTL+I D+GIGM K DL+NNLGTIA+SGTK F+E L   A  D  +IGQFGVGFYSA++VA ++ V++ K  DD+ Y+W S A G      D S E   +GT +TLYLK+D+
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKI--DKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG--YEINDASKEE--QGTSITLYLKDDE 175          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJD (Chaperone protein htpG OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=htpG PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.279e-42
Identity = 99/179 (55.31%), Postives = 129/179 (72.07%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDK--SKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D     L  +P++ I+I  DK  KTL+I D+GIGM K DL+NNLGTIA+SGTK F+E L   A  D  +IGQFGVGFYSA++VA ++ V++ K  DD+ Y+W S A G      D S E   +GT +TLYLK+D+
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKI--DKDKKTLSISDNGIGMDKNDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG--YEINDASKEE--QGTSITLYLKDDE 175          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_BURCH (Chaperone protein htpG OS=Burkholderia cenocepacia (strain HI2424) GN=htpG PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.279e-42
Identity = 94/183 (51.37%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKHND---DEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE L D +  +  P L IRI  DKA +T+TI D+GIGM++ + + NLGTIARSGTKEF   L      D ++IGQFGVGFYS ++VA+++ V T+      +E   WES   G FT+    + E   RGT +TL+L+E +
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPNLRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLSGDQQKDAALIGQFGVGFYSGFIVADKITVETRRAGLPANEAVRWESAGEGDFTID---AIERAQRGTTITLHLREGE 183          
The following BLAST results are available for this feature:
BLAST of FC920358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_SHIDS9.792e-4349.73Chaperone protein htpG OS=Shigella dysenteriae ser... [more]
HTPG_SHEFN9.792e-4348.13Chaperone protein htpG OS=Shewanella frigidimarina... [more]
HTPG_SHEB99.792e-4347.59Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_SHEB89.792e-4347.59Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_SHEB59.792e-4347.59Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_AERHH9.792e-4351.37Chaperone protein htpG OS=Aeromonas hydrophila sub... [more]
HTPG_NITEC1.279e-4248.65Chaperone protein htpG OS=Nitrosomonas eutropha (s... [more]
HTPG_CAMJR1.279e-4255.31Chaperone protein htpG OS=Campylobacter jejuni (st... [more]
HTPG_CAMJD1.279e-4255.31Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_BURCH1.279e-4251.37Chaperone protein htpG OS=Burkholderia cenocepacia... [more]

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Properties
Property NameValue
Genbank descriptionC32007C07EF RVDevelop1 Citrus clementina cDNA clone C32007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920358 ID=FC920358; Name=FC920358; organism=Citrus clementina; type=EST; length=765bp
TTCGCTTTATAAAAATCTCTCTGCGCAAGCAAAAGCAAAAGCAAAAGCAA
TTCTCTTCGGTATTCTTGTTTCCAATTTTTTTCTTTTGTTTATTCTGTGT
TGTGAGGAAGAGCAATGGCGGACACTGAGACATTCGCATTCCAGGCAGAG
ATCAACCAGCTGTTGAGTTTGATCATCAATACTTTCTACAGCAACAAGGA
GATTTTCCTTCGTGAACTCATCAGCAACTCCTCTGATGCTTTGGACAAGA
TTCGATTCGAGAGCCTGACGGACAAGAGCAAGCTCGATGGACAACCAGAG
CTTTTCATCAGAATCATCCCTGACAAGGCTAACAAGACGCTCACTATTGT
TGATAGCGGTATCGGCATGACCAAAGCAGATTTGGTAAATAATTTGGGTA
CAATTGCGAGATCCGGGACCAAGGAGTTTATGGAGGCTTTGCAGGCCGGG
GCTGATGTGTCAATGATTGGTCAATTTGGTGTTGGTTTCTATTCGGCTTA
CCTTGTTGCTGAGAGGGTTGTTGTGACTACAAAGCACAATGACGATGAGC
AATACATCTGGGAATCACAAGCTGGTGGTTCTTTCACTGTTACCAGGGAT
GTTAGTGGAGAGCCCCTTGGTAGAGGTACCAAGATGACTCTGTACCTCAA
GGAGGATCAGCTTGAGTACTTGGAGGAGAGGAGAATTAGGACCTTGTGAA
GAGCACTCTGAATCATCAGCTCCCCTATTACTCTGGACTGAGAGACACTG
AGAAGAATTAGCGAT
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