FC920358

Overview
NameFC920358
Unique NameFC920358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_ERWCT (Chaperone protein htpG OS=Erwinia carotovora subsp. atroseptica GN=htpG PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.721e-42
Identity = 91/187 (48.66%), Postives = 133/187 (71.12%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M   ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L+      G  +L +R+  DK  +TLTI D+GIGM++ ++++NLGTIA+SGTK F+E++ +    D  +IGQFGVGFYSA++VA++V V T+    N D+   WES   G +T+  D++ +   RGT++TL+L+E +
Sbjct:    1 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSTPELYAGDGDLRVRVSTDKEKRTLTISDNGIGMSRDEVIDNLGTIAKSGTKSFLESMGSDQVKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGANADQGVYWESAGEGDYTIA-DITKD--DRGTEITLHLREGE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CITK8 (Chaperone protein htpG OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=htpG PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.721e-42
Identity = 91/187 (48.66%), Postives = 132/187 (70.59%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQ---YIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M   ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L++    +G  EL +R+  DK  +TLTI D+G+GM + D++++LGTIA+SGTK F+E++      D  +IGQFGVGFYSA++VA++V V T+   D+      WES   G +TV  D++ +   RGT++TL+L+E +
Sbjct:    1 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTIADNGVGMNRDDVIDHLGTIAKSGTKSFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDKPENGVFWESAGEGEYTVA-DITKD--DRGTEITLHLREGE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_NITMU (Chaperone protein htpG OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=htpG PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.860e-42
Identity = 90/188 (47.87%), Postives = 133/188 (70.74%), Query Frame = 1
Query:  112 AMADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTKH---NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            A A  E   FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE+LTD +  +   +L IR+  DK  +T+T+ D+GIGM++ ++++++GTIA+SGT+EF +AL      D  +IGQFGVGFYSA++VA++V +TT+      +    WES   G +T+  +   +P GRGT++TL+L+E +
Sbjct:    3 ATATKEHLNFQTEVKQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEALTDGALYESDSDLKIRVSYDKEARTITVADNGIGMSRQEVIDHIGTIAKSGTREFFDALTGDQAKDAHLIGQFGVGFYSAFIVADKVTLTTRRAGLTHEHGVRWESGGEGDYTL--ETIDKP-GRGTEVTLHLREGE 187          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJJ (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=htpG PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.860e-42
Identity = 98/179 (54.75%), Postives = 129/179 (72.07%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDK--SKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D     L  +P++ I+I  DK  KTL+I D+GIGM K DL+NNLGTIA+SGTK F+E L   A  D  +IGQFGVGFYSA++VA ++ V++ K  DD+ Y+W S A G      D + E   +GT +TLYLK+D+
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKI--DKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG--YEIDDANKEE--QGTSITLYLKDDE 175          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJE (Chaperone protein htpG OS=Campylobacter jejuni GN=htpG PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.860e-42
Identity = 98/179 (54.75%), Postives = 129/179 (72.07%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDK--SKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D     L  +P++ I+I  DK  KTL+I D+GIGM K DL+NNLGTIA+SGTK F+E L   A  D  +IGQFGVGFYSA++VA ++ V++ K  DD+ Y+W S A G      D + E   +GT +TLYLK+D+
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKI--DKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG--YEIDDANKEE--QGTSITLYLKDDE 175          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_BURS3 (Chaperone protein htpG OS=Burkholderia sp. (strain 383) GN=htpG PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.860e-42
Identity = 93/183 (50.82%), Postives = 125/183 (68.31%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKHND---DEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE L D +  +  P + IRI  DKA +T+TI D+GIGM++ + + NLGTIARSGTKEF   L      D ++IGQFGVGFYS ++VA+++ V T+       E   WES   G FT+    + E   RGT +TL+L+E +
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYEDDPNVRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLSGDQQKDAALIGQFGVGFYSGFIVADKITVETRRAGLPASEAVRWESAGEGDFTID---AIERAQRGTTITLHLREGE 183          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_BORPE (Chaperone protein htpG OS=Bordetella pertussis GN=htpG PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.860e-42
Identity = 91/184 (49.46%), Postives = 126/184 (68.48%), Query Frame = 1
Query:  124 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKHND---DEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            +ET  FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++     L+G  EL IR+  DKA +T+TI D+GIG+++ + V NLGTIARSGT+EF   L      D  +IGQFGVGFYS+++VA++V V ++      +E   WES   G F++      E  GRGT + L+L+ D+
Sbjct:   10 SETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPGLLEGDGELAIRVGYDKAARTITISDNGIGLSRDEAVANLGTIARSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADKVTVLSRRAGLAANEAIRWESDGQGEFSI---APAEKAGRGTDVVLHLRADE 190          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_YERE8 (Chaperone protein htpG OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=htpG PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.347e-42
Identity = 91/188 (48.40%), Postives = 132/188 (70.21%), Query Frame = 1
Query:  112 AMADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTKHND---DEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            +M   ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L+     +G  EL +R+  DK  +TLT+ D+GIGM++ ++++NLGTIA+SGTK F+E++      D  +IGQFGVGFYSA++VA++V V T+      D    WES   G +T+  D++ E   RGT++TL+L+E +
Sbjct:    2 SMKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSHPELFEGDGELRVRLSFDKEKRTLTLSDNGIGMSREEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGAPADAGVFWESAGEGDYTIA-DITKE--DRGTEITLHLREGE 186          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_MAGSA (Chaperone protein htpG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=htpG PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 8.289e-42
Identity = 90/177 (50.85%), Postives = 125/177 (70.62%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIGQFGVGFYSAYLVAERVVVTT-KHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            FQAE+ +LL +++++ YSNKEIFLRELISN+SD+ D++R+ ++T+   LDG  E  IR++PDK   TLTI+D+G GM+  +L+ NLGTIA+SGT EF+  L   A  DVS+IGQFGVGFYSA++VAE V VT+ K  + + + W S   G FTV+     E   RG  +TL L+E +
Sbjct:    8 FQAEVGKLLDIVVHSLYSNKEIFLRELISNASDSCDRLRYGAITEPDLLDGDSEFRIRLVPDKDAGTLTIIDNGQGMSHDELIANLGTIAKSGTSEFLARLTGDAKKDVSLIGQFGVGFYSAFMVAEEVTVTSRKAGEAKGWKWVSDGKGEFTVS---PAEDAARGAAITLKLREGE 181          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_HELPY (Chaperone protein htpG OS=Helicobacter pylori GN=htpG PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.289e-42
Identity = 92/180 (51.11%), Postives = 123/180 (68.33%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKH-NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            + + FQ EINQLL L+I++ YSNKEIFLREL+SN+SDALDK+ +  LTD+          I +  D   KTLTI D+GIGM K DL+ +LGTIA+SGTK F+ AL      D ++IGQFGVGFYSA++VA ++VV TK  N D+ Y W S   G F ++  V  E   +GT++TL+LK++
Sbjct:    4 QEYTFQTEINQLLDLMIHSLYSNKEIFLRELVSNASDALDKLNYLMLTDEKLKGLNTTPSIHLSFDSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTKNFLSALSGDKKKDSALIGQFGVGFYSAFMVASKIVVQTKKVNSDQAYAWVSDGKGKFEISECVKDE---QGTEITLFLKDE 180          
The following BLAST results are available for this feature:
BLAST of FC920358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_ERWCT3.721e-4248.66Chaperone protein htpG OS=Erwinia carotovora subsp... [more]
HTPG_CITK83.721e-4248.66Chaperone protein htpG OS=Citrobacter koseri (stra... [more]
HTPG_NITMU4.860e-4247.87Chaperone protein htpG OS=Nitrosospira multiformis... [more]
HTPG_CAMJJ4.860e-4254.75Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_CAMJE4.860e-4254.75Chaperone protein htpG OS=Campylobacter jejuni GN=... [more]
HTPG_BURS34.860e-4250.82Chaperone protein htpG OS=Burkholderia sp. (strain... [more]
HTPG_BORPE4.860e-4249.46Chaperone protein htpG OS=Bordetella pertussis GN=... [more]
HTPG_YERE86.347e-4248.40Chaperone protein htpG OS=Yersinia enterocolitica ... [more]
HTPG_MAGSA8.289e-4250.85Chaperone protein htpG OS=Magnetospirillum magneti... [more]
HTPG_HELPY8.289e-4251.11Chaperone protein htpG OS=Helicobacter pylori GN=h... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007C07EF RVDevelop1 Citrus clementina cDNA clone C32007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920358 ID=FC920358; Name=FC920358; organism=Citrus clementina; type=EST; length=765bp
TTCGCTTTATAAAAATCTCTCTGCGCAAGCAAAAGCAAAAGCAAAAGCAA
TTCTCTTCGGTATTCTTGTTTCCAATTTTTTTCTTTTGTTTATTCTGTGT
TGTGAGGAAGAGCAATGGCGGACACTGAGACATTCGCATTCCAGGCAGAG
ATCAACCAGCTGTTGAGTTTGATCATCAATACTTTCTACAGCAACAAGGA
GATTTTCCTTCGTGAACTCATCAGCAACTCCTCTGATGCTTTGGACAAGA
TTCGATTCGAGAGCCTGACGGACAAGAGCAAGCTCGATGGACAACCAGAG
CTTTTCATCAGAATCATCCCTGACAAGGCTAACAAGACGCTCACTATTGT
TGATAGCGGTATCGGCATGACCAAAGCAGATTTGGTAAATAATTTGGGTA
CAATTGCGAGATCCGGGACCAAGGAGTTTATGGAGGCTTTGCAGGCCGGG
GCTGATGTGTCAATGATTGGTCAATTTGGTGTTGGTTTCTATTCGGCTTA
CCTTGTTGCTGAGAGGGTTGTTGTGACTACAAAGCACAATGACGATGAGC
AATACATCTGGGAATCACAAGCTGGTGGTTCTTTCACTGTTACCAGGGAT
GTTAGTGGAGAGCCCCTTGGTAGAGGTACCAAGATGACTCTGTACCTCAA
GGAGGATCAGCTTGAGTACTTGGAGGAGAGGAGAATTAGGACCTTGTGAA
GAGCACTCTGAATCATCAGCTCCCCTATTACTCTGGACTGAGAGACACTG
AGAAGAATTAGCGAT
back to top