FC920358

Overview
NameFC920358
Unique NameFC920358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_ACIAD (Chaperone protein htpG OS=Acinetobacter sp. (strain ADP1) GN=htpG PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.604e-37
Identity = 85/188 (45.21%), Postives = 123/188 (65.43%), Query Frame = 1
Query:  124 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKH-----NDDEQYIWESQAGGSFTV---TRDVSGEPLGRGTKMTLYLKED 657
            T+ ++FQAE+ QLL L+ ++ YSN EIFLRELISN+SDA DK+RFE +      +    L +R+  DK NKT+TI D+GIG+++ + ++NLGTIA+SGTK+FM  L     +D  +IGQFGVGFYS ++VA+++ V ++      ND  +  W S   G F V   T+D       RGT + L+L++D
Sbjct:    7 TQNYSFQAEVAQLLHLVTHSLYSNPEIFLRELISNASDACDKLRFEGINHPEYYEDDANLRVRVSLDKENKTITISDNGIGLSQQEAIDNLGTIAKSGTKDFMSKLTGDQKSDAQLIGQFGVGFYSGFIVADKITVESRRAGLPANDGVR--WISGGTGDFEVQQITKD------SRGTSIILHLRDD 186          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_PSYA2 (Chaperone protein htpG OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=htpG PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.707e-37
Identity = 86/177 (48.59%), Postives = 115/177 (64.97%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKHNDD---EQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKE 654
            F+AE+ QLL L+ ++ YSN +IF+REL+SN+SDA DK+RFE+  D S  +   EL IRI  D+  KT+T  D+GIGM +AD + NLGTIA+SGTK F++ L      D  +IGQFGVGFYS ++VA+ + V T+   D       W S   GSFTV      E   RG+ +TL+LKE
Sbjct:   19 FEAEVAQLLHLVTHSLYSNSDIFVRELVSNASDACDKLRFEATNDDSLYEDDGELRIRIAVDEDAKTITFTDNGIGMNEADAIENLGTIAKSGTKAFLDKLSDSQKQDGQLIGQFGVGFYSGFIVADTISVETRKAGDAAENGVRWVSDGTGSFTVENISKTE---RGSSITLHLKE 192          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_RHILO (Chaperone protein htpG OS=Rhizobium loti GN=htpG PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37
Identity = 79/180 (43.89%), Postives = 124/180 (68.89%), Query Frame = 1
Query:  124 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGA-DVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            TET AF+A++++LL +++++ YS+K++FLRELISN++DA +K+RFE+++    L   P+  I I  D  NK +T+ D+GIGM++ D+   LGTIARSGT+ F+E + +G  D  +IGQFGVGFYSA++VA+RV V++     +E + W S   GS+ +          RGT++ L+L +D
Sbjct:    8 TETRAFEADVSRLLHMMVHSVYSDKDVFLRELISNAADACEKLRFEAVSRPELLGDDPKPRISISADPDNKEITVEDNGIGMSRDDMAEALGTIARSGTRAFIERVGSGTEDTQLIGQFGVGFYSAFMVADRVDVISRLAGSEEAWRWSSDGKGSYEIAPAPLEAAPRRGTRVVLHLMDD 187          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_MYCVP (Chaperone protein htpG OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37
Identity = 85/186 (45.70%), Postives = 125/186 (67.20%), Query Frame = 1
Query:  118 ADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGAD----VSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTV-TRDVSGEPLGRGTKMTLYLKED 657
            A  E   FQAE  QLL L+I++ YSNK+ FLREL+SN+SDALDK+R ES  +K       +L I I  DK  +TLT+ D+GIGMT+ ++V+ +GT+A+SGT E  + L+   D      +IGQFG+GFY++++VA+RV ++T K  + E   WES   G++T+ T D +G  + +GT +TL+LK +
Sbjct:    3 AHVEQLEFQAEARQLLDLMIHSVYSNKDSFLRELVSNASDALDKLRLESFRNKDLDVDTSDLHIEIDVDKEARTLTVRDNGIGMTRDEVVSLIGTLAKSGTGELRQQLREAKDKDTSEELIGQFGIGFYASFMVADRVELLTRKAGESEATRWESSGEGTYTIETVDQAGGEVPQGTSVTLHLKPE 188          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_FRATH (Chaperone protein htpG OS=Francisella tularensis subsp. holarctica (strain LVS) GN=htpG PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37
Identity = 80/180 (44.44%), Postives = 127/180 (70.56%), Query Frame = 1
Query:  133 FAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            + F+ E+++LL L+I++ YSN+EIFLREL+SNSSDA++K+R+ES+++ +  +   +  IRI  DK  KT+T+ D+GIGMT+ +++ NLGTIA+SGTK+F+E+L      D  +IGQFGVGFYS+++VA++V V T+    +  +   W S A   FTV      +   RGT++ L++K++
Sbjct:    6 YTFETEVDKLLHLVIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKTITVSDNGIGMTEEEVIENLGTIAKSGTKKFLESLTGDKSKDNELIGQFGVGFYSSFIVADKVTVRTRKAGQDKSQATKWVSDAQNGFTVEIITKEK---RGTEVILHIKKE 182          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_FRATF (Chaperone protein htpG OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=htpG PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37
Identity = 80/180 (44.44%), Postives = 127/180 (70.56%), Query Frame = 1
Query:  133 FAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            + F+ E+++LL L+I++ YSN+EIFLREL+SNSSDA++K+R+ES+++ +  +   +  IRI  DK  KT+T+ D+GIGMT+ +++ NLGTIA+SGTK+F+E+L      D  +IGQFGVGFYS+++VA++V V T+    +  +   W S A   FTV      +   RGT++ L++K++
Sbjct:    6 YTFETEVDKLLHLVIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKTITVSDNGIGMTEEEVIENLGTIAKSGTKKFLESLTGDKSKDNELIGQFGVGFYSSFIVADKVTVRTRKAGQDKSQATKWVSDAQNGFTVEIITKEK---RGTEVILHIKKE 182          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_DESPS (Chaperone protein htpG OS=Desulfotalea psychrophila GN=htpG PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37
Identity = 86/184 (46.74%), Postives = 122/184 (66.30%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQ-YIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            M + + + FQAE  +LL ++IN+ Y+ +++F+RELISNS+DAL+K+R E+LT +  LD    L I I  D+   TLTI DSGIGMT+ +LVNNLG IA SG+  F   L      DV++IGQFGVGFY+A++   +V V T+  D  Q + W S+  GSFT+T     + L RGT++ + LK+D
Sbjct:    1 MTEAKNYEFQAETKKLLDIVINSLYTERDVFVRELISNSADALEKMRHEALTCQEVLDEDLPLEITIDLDEEAHTLTISDSGIGMTEQELVNNLGVIAHSGSGSFYAELAEAVKKDVNLIGQFGVGFYAAFMAGNKVRVQTRSWDGSQGHEWLSEGAGSFTIT---PLDGLARGTRIVVELKDD 181          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_COLP3 (Chaperone protein htpG OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=htpG PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37
Identity = 83/183 (45.36%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQA--GADVSMIGQFGVGFYSAYLVAERVVVTTKHNDD---EQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            +  AF ++  ++L L+I++ YSNKEIFLREL+SN++DA DK+RF++L+D +  +   +L +R+  DK N TLTI D+GIGM   +++ +LGTIA+SGT EF   L     +D  +IGQFGVGFYSA++VA++V V T+   D   +   W S   G FT  +    E   RGT + L+LKED+
Sbjct:    8 QNHAFASDNAKILQLMIHSLYSNKEIFLRELVSNAADAADKLRFKALSDNTLYENDGDLRVRVSCDKENNTLTISDNGIGMNVDEVIEHLGTIAKSGTAEFFSQLSGDQASDSQLIGQFGVGFYSAFIVADKVTVRTRKAGDSATDGVEWISAGEGEFTTAKI---EKTNRGTDIILHLKEDE 187          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_ALKOO (Chaperone protein htpG OS=Alkaliphilus oremlandii (strain OhILAs) GN=htpG PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37
Identity = 86/181 (47.51%), Postives = 120/181 (66.30%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQ-YIWESQAGGSFTVTRDVSGEPLGR---GTKMTLYLKED 657
            ET  F+AE  +LL L+I++ Y+ KEIFLRELISN+SDA+DKI + +LTD++    + + +I+IIPDK  + L I+D+GIGMTK +L  NLG IA+SG+  F  A +      +IGQFGVGFYS+++VAE V V +K  D E  Y WES     +T+      EP  +   GT++ L +KED
Sbjct:    2 ETKQFKAESKRLLDLMIHSIYTQKEIFLRELISNASDAIDKIYYRALTDEALNFNKEDYYIKIIPDKEKRILRIIDTGIGMTKEELEENLGVIAKSGSLAFKSAHELKDGYDIIGQFGVGFYSSFMVAETVTVISKSIDSESGYKWESTGVDGYTI------EPWDKDTVGTEIVLRIKED 176          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_NITWN (Chaperone protein htpG OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=htpG PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.029e-37
Identity = 81/181 (44.75%), Postives = 127/181 (70.17%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFM---EALQAGADVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            E+  F+A++ +LL +++++ YS+K++FLRELISN++DA +++R+E+++D + L  +    I I  D   + L + D+GIGM + +LV+ LGTIARSGTK F+   EA ++G  V++IGQFGVGFYSA++VA++V VV+ +    E + W S   G+FTVT     E   RGT++TL+L ED
Sbjct:   12 ESRVFEADVAKLLQMMVHSVYSDKDVFLRELISNAADACERLRYEAISDPALLTDETRPRISITIDAERRQLAVEDNGIGMGRDELVDALGTIARSGTKAFIEQAEAAESGDGVALIGQFGVGFYSAFMVADQVDVVSRRAGAREAWRWSSDGKGTFTVTPVDESEAPARGTRVTLHLTED 192          
The following BLAST results are available for this feature:
BLAST of FC920358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_ACIAD3.604e-3745.21Chaperone protein htpG OS=Acinetobacter sp. (strai... [more]
HTPG_PSYA24.707e-3748.59Chaperone protein htpG OS=Psychrobacter arcticus (... [more]
HTPG_RHILO6.147e-3743.89Chaperone protein htpG OS=Rhizobium loti GN=htpG P... [more]
HTPG_MYCVP6.147e-3745.70Chaperone protein htpG OS=Mycobacterium vanbaaleni... [more]
HTPG_FRATH6.147e-3744.44Chaperone protein htpG OS=Francisella tularensis s... [more]
HTPG_FRATF6.147e-3744.44Chaperone protein htpG OS=Francisella tularensis s... [more]
HTPG_DESPS6.147e-3746.74Chaperone protein htpG OS=Desulfotalea psychrophil... [more]
HTPG_COLP36.147e-3745.36Chaperone protein htpG OS=Colwellia psychrerythrae... [more]
HTPG_ALKOO6.147e-3747.51Chaperone protein htpG OS=Alkaliphilus oremlandii ... [more]
HTPG_NITWN8.029e-3744.75Chaperone protein htpG OS=Nitrobacter winogradskyi... [more]

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Properties
Property NameValue
Genbank descriptionC32007C07EF RVDevelop1 Citrus clementina cDNA clone C32007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920358 ID=FC920358; Name=FC920358; organism=Citrus clementina; type=EST; length=765bp
TTCGCTTTATAAAAATCTCTCTGCGCAAGCAAAAGCAAAAGCAAAAGCAA
TTCTCTTCGGTATTCTTGTTTCCAATTTTTTTCTTTTGTTTATTCTGTGT
TGTGAGGAAGAGCAATGGCGGACACTGAGACATTCGCATTCCAGGCAGAG
ATCAACCAGCTGTTGAGTTTGATCATCAATACTTTCTACAGCAACAAGGA
GATTTTCCTTCGTGAACTCATCAGCAACTCCTCTGATGCTTTGGACAAGA
TTCGATTCGAGAGCCTGACGGACAAGAGCAAGCTCGATGGACAACCAGAG
CTTTTCATCAGAATCATCCCTGACAAGGCTAACAAGACGCTCACTATTGT
TGATAGCGGTATCGGCATGACCAAAGCAGATTTGGTAAATAATTTGGGTA
CAATTGCGAGATCCGGGACCAAGGAGTTTATGGAGGCTTTGCAGGCCGGG
GCTGATGTGTCAATGATTGGTCAATTTGGTGTTGGTTTCTATTCGGCTTA
CCTTGTTGCTGAGAGGGTTGTTGTGACTACAAAGCACAATGACGATGAGC
AATACATCTGGGAATCACAAGCTGGTGGTTCTTTCACTGTTACCAGGGAT
GTTAGTGGAGAGCCCCTTGGTAGAGGTACCAAGATGACTCTGTACCTCAA
GGAGGATCAGCTTGAGTACTTGGAGGAGAGGAGAATTAGGACCTTGTGAA
GAGCACTCTGAATCATCAGCTCCCCTATTACTCTGGACTGAGAGACACTG
AGAAGAATTAGCGAT
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