FC920358

Overview
NameFC920358
Unique NameFC920358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_RHIME (Chaperone protein htpG OS=Rhizobium meliloti GN=htpG PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.583e-35
Identity = 78/181 (43.09%), Postives = 121/181 (66.85%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGAD---VSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            E   F+A++ +LL L++++ YS+K +FLRELISN++DA +K+R+E++     L   P   I +  D+ N  L I D+GIGM + +LV +LGTIARSGT+ FME ++A  +     +IGQFGVGFYSA++VA+ V VV+ +   D+ + W S   GS+TV+     +   RGT++TL+L ++
Sbjct:    9 EKHVFEADVAKLLHLMVHSVYSDKNVFLRELISNAADACEKLRYEAIVAPELLGSDPASRITLTLDEENARLVIEDNGIGMGRDELVESLGTIARSGTRAFMERIEAAQNKDGAQLIGQFGVGFYSAFMVADNVDVVSRRAGTDKAWHWASDGKGSYTVSAVDLADAPARGTRITLHLMDE 189          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CLOPS (Chaperone protein htpG OS=Clostridium perfringens (strain SM101 / Type A) GN=htpG PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35
Identity = 78/172 (45.35%), Postives = 115/172 (66.86%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTK-HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLK 651
            F+AE  +LL ++IN+ Y+N+EIFLRELISN+SDA+DK+ +++L D S    + + +I+I P+K  +TLTI D GIGMT+ +L  NLG IA+SG+ +F +  +      +IGQFGVGFYS +LVA+++ V TK    D+ Y WES     +T++     E    GT + L+LK
Sbjct:    6 FKAESKRLLDIVINSIYTNREIFLRELISNASDAIDKVYYKTLGDSSLTFNKDDYYIKIKPNKEERTLTISDKGIGMTEKELDENLGVIAKSGSLQFKKENEIKDGFDIIGQFGVGFYSGFLVADKITVITKAFGADKAYKWESDGVDGYTIS---EAEKDSFGTDIILHLK 174          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CLOPE (Chaperone protein htpG OS=Clostridium perfringens GN=htpG PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35
Identity = 78/172 (45.35%), Postives = 115/172 (66.86%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTK-HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLK 651
            F+AE  +LL ++IN+ Y+N+EIFLRELISN+SDA+DK+ +++L D S    + + +I+I P+K  +TLTI D GIGMT+ +L  NLG IA+SG+ +F +  +      +IGQFGVGFYS +LVA+++ V TK    D+ Y WES     +T++     E    GT + L+LK
Sbjct:    6 FKAESKRLLDIVINSIYTNREIFLRELISNASDAIDKVYYKTLGDSSLTFNKDDYYIKIKPNKEERTLTISDKGIGMTEKELDENLGVIAKSGSLQFKKENEIKDGFDIIGQFGVGFYSGFLVADKITVITKAFGADKAYKWESDGVDGYTIS---EAEKDSFGTDIILHLK 174          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CLOP1 (Chaperone protein htpG OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=htpG PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35
Identity = 78/172 (45.35%), Postives = 115/172 (66.86%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTK-HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLK 651
            F+AE  +LL ++IN+ Y+N+EIFLRELISN+SDA+DK+ +++L D S    + + +I+I P+K  +TLTI D GIGMT+ +L  NLG IA+SG+ +F +  +      +IGQFGVGFYS +LVA+++ V TK    D+ Y WES     +T++     E    GT + L+LK
Sbjct:    6 FKAESKRLLDIVINSIYTNREIFLRELISNASDAIDKVYYKTLGDSSLTFNKDDYYIKIKPNKEERTLTISDKGIGMTEKELDENLGVIAKSGSLQFKKENEIKDGFDIIGQFGVGFYSGFLVADKITVITKAFGADKAYKWESDGVDGYTIS---EAEKDSFGTDIILHLK 174          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: TRAP1_MOUSE (Heat shock protein 75 kDa, mitochondrial OS=Mus musculus GN=Trap1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.515e-35
Identity = 84/177 (47.46%), Postives = 117/177 (66.10%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVS--MIGQFGVGFYSAYLVAERVVVTTKHNDDEQ--YIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            FQAE  +LL ++  + YS KE+F+RELISN+SDAL+K+R + + +   L   PE+ I +  D    T+TI D+GIGMT+ +LV+NLGTIARSG+K F+EALQ  A+ S  +IGQFGVGFYSA++VA++V V ++    E   Y W S   G F +       P   GTK+ ++LK D
Sbjct:   92 FQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVCEGQVL---PEMEIHLQTDAKKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLEALQNQAETSSKIIGQFGVGFYSAFMVADKVEVYSRSAAPESPGYQWLSDGSGVFEIAEASGVRP---GTKIIIHLKSD 262          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_BACSK (Chaperone protein htpG OS=Bacillus clausii (strain KSM-K16) GN=htpG PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.282e-34
Identity = 81/174 (46.55%), Postives = 114/174 (65.52%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHND-DEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            FQAE  +LL +++N+ YS KEIFLRELISN+SDA+DK+ + SLTD S    +    I +  DK N+ L + D+GIGMTK +L  NLGTIA+SG+  F +  +      +IGQFGVGFY+A++VA++V V T+  D D+ Y WES     +T+      E    GT +TL++KE+
Sbjct:    6 FQAESKRLLEMMVNSIYSQKEIFLRELISNASDAIDKMYYRSLTDDSLSFEKDRYAIYVEADKDNRKLVMKDTGIGMTKEELEANLGTIAKSGSLAFKKETEIEDGHDIIGQFGVGFYAAFMVADKVTVITRSIDSDQAYKWESDGTDGYTIE---PAEKEDVGTVITLHIKEN 176          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CHLTE (Chaperone protein htpG OS=Chlorobium tepidum GN=htpG PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 83/186 (44.62%), Postives = 121/186 (65.05%), Query Frame = 1
Query:  133 FAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ------AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDD--EQYIWESQAGGSFTVTRDVSGEPL---GRGTKMTLYLKED 657
            F ++AE+ QLL+LI+++ Y++ EIFLRELISN+SDAL K RF  L+    LD   +L I I  DK + +  I D+GIGM++ +L++NLGT+A SGT  FMEAL+         D ++IGQFGVGFYS ++V + V V TK  +   + + W+S   GS+T+      EP+    RGT+++  LKE+
Sbjct:   12 FEYKAEMKQLLNLIVHSLYTHPEIFLRELISNASDALGKARFRMLSSDEGLDKSGDLKITITVDKESGSFVIEDTGIGMSEEELISNLGTVASSGTLGFMEALKEQQKEGQRLDANLIGQFGVGFYSVFMVTDEVTVETKSIESGLQGWRWKSSGQGSYTI------EPVEREARGTRISFILKEE 191          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: TRAP1_HUMAN (Heat shock protein 75 kDa, mitochondrial OS=Homo sapiens GN=TRAP1 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34
Identity = 85/182 (46.70%), Postives = 121/182 (66.48%), Query Frame = 1
Query:  124 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVS--MIGQFGVGFYSAYLVAERVVVTTKHNDDEQ--YIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            T    FQAE  +LL ++  + YS KE+F+RELISN+SDAL+K+R + ++D   L   PE+ I +  +    T+TI D+GIGMT+ +LV+NLGTIARSG+K F++ALQ  A+ S  +IGQFGVGFYSA++VA+RV V ++        Y W S   G F +  + SG  +  GTK+ ++LK D
Sbjct:   85 TSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQAL---PEMEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQAEASSKIIGQFGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIA-EASG--VRTGTKIIIHLKSD 260          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_PROVI (Chaperone protein htpG OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=htpG PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34
Identity = 82/185 (44.32%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  118 ADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ---AGADVSMIGQFGVGFYSAYLVAERVVVTTK--HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            A  + F ++AE+ QLL LI+++ Y++ EIFLREL+SN++DAL K RF SLTD   +    E  I I  DK      I DSGIGM++ +L+ NLGT+A+SGT  FM++LQ      D ++IGQFGVGFYS ++V E V V T+      E   W+S   G++T+ +    E   RGT+++  LKE+
Sbjct:    7 APVQEFEYKAEMKQLLDLIVHSLYTHPEIFLRELVSNAADALSKARFSSLTDGGLMAAAGEDAIHITLDKEKLLFVIEDSGIGMSEDELIANLGTVAKSGTLGFMQSLQEQKKELDGNLIGQFGVGFYSVFMVTENVTVETRSAQEGSEGLRWQSSGQGTYTIEKVEKKE---RGTRISFTLKEE 188          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: TRAP1_DICDI (TNF receptor-associated protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=trap1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.856e-34
Identity = 78/185 (42.16%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  109 RAMADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL-DGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGAD-VSMIGQFGVGFYSAYLVAERVVVTTKH--NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLK 651
            R +  +E  +FQ E  ++L ++  + Y+ KE+F+RELISN+SDA++K+R   LT+ S + D      I+I  D+ NKTL I DSGIGMTK +++ NLG I  SG+ +F++ L    D  S+IGQFGVGFYS ++V   + + TK      + Y+WES   GS+++T     E + RGTK+ ++LK
Sbjct:   93 RVIGLSEKLSFQTETQKILHIVAESLYTEKEVFIRELISNASDAIEKVRHTQLTNASMIEDASIPFEIKISTDEDNKTLIIQDSGIGMTKDEMIKNLGKIGYSGSSDFIKKLGENPDKASIIGQFGVGFYSCFMVGHTIKIYTKSATPGSKGYLWESDGTGSYSIT---EAEGVSRGTKIIIHLK 274          
The following BLAST results are available for this feature:
BLAST of FC920358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_RHIME2.583e-3543.09Chaperone protein htpG OS=Rhizobium meliloti GN=ht... [more]
HTPG_CLOPS4.406e-3545.35Chaperone protein htpG OS=Clostridium perfringens ... [more]
HTPG_CLOPE4.406e-3545.35Chaperone protein htpG OS=Clostridium perfringens ... [more]
HTPG_CLOP14.406e-3545.35Chaperone protein htpG OS=Clostridium perfringens ... [more]
TRAP1_MOUSE7.515e-3547.46Heat shock protein 75 kDa, mitochondrial OS=Mus mu... [more]
HTPG_BACSK1.282e-3446.55Chaperone protein htpG OS=Bacillus clausii (strain... [more]
HTPG_CHLTE1.674e-3444.62Chaperone protein htpG OS=Chlorobium tepidum GN=ht... [more]
TRAP1_HUMAN2.186e-3446.70Heat shock protein 75 kDa, mitochondrial OS=Homo s... [more]
HTPG_PROVI2.186e-3444.32Chaperone protein htpG OS=Prosthecochloris vibriof... [more]
TRAP1_DICDI2.856e-3442.16TNF receptor-associated protein 1 homolog, mitocho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007C07EF RVDevelop1 Citrus clementina cDNA clone C32007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920358 ID=FC920358; Name=FC920358; organism=Citrus clementina; type=EST; length=765bp
TTCGCTTTATAAAAATCTCTCTGCGCAAGCAAAAGCAAAAGCAAAAGCAA
TTCTCTTCGGTATTCTTGTTTCCAATTTTTTTCTTTTGTTTATTCTGTGT
TGTGAGGAAGAGCAATGGCGGACACTGAGACATTCGCATTCCAGGCAGAG
ATCAACCAGCTGTTGAGTTTGATCATCAATACTTTCTACAGCAACAAGGA
GATTTTCCTTCGTGAACTCATCAGCAACTCCTCTGATGCTTTGGACAAGA
TTCGATTCGAGAGCCTGACGGACAAGAGCAAGCTCGATGGACAACCAGAG
CTTTTCATCAGAATCATCCCTGACAAGGCTAACAAGACGCTCACTATTGT
TGATAGCGGTATCGGCATGACCAAAGCAGATTTGGTAAATAATTTGGGTA
CAATTGCGAGATCCGGGACCAAGGAGTTTATGGAGGCTTTGCAGGCCGGG
GCTGATGTGTCAATGATTGGTCAATTTGGTGTTGGTTTCTATTCGGCTTA
CCTTGTTGCTGAGAGGGTTGTTGTGACTACAAAGCACAATGACGATGAGC
AATACATCTGGGAATCACAAGCTGGTGGTTCTTTCACTGTTACCAGGGAT
GTTAGTGGAGAGCCCCTTGGTAGAGGTACCAAGATGACTCTGTACCTCAA
GGAGGATCAGCTTGAGTACTTGGAGGAGAGGAGAATTAGGACCTTGTGAA
GAGCACTCTGAATCATCAGCTCCCCTATTACTCTGGACTGAGAGACACTG
AGAAGAATTAGCGAT
back to top