FC920358

Overview
NameFC920358
Unique NameFC920358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHESW (Chaperone protein htpG OS=Shewanella sp. (strain W3-18-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.157e-43
Identity = 92/187 (49.20%), Postives = 132/187 (70.59%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +G  EL +RI  DK   T+TI D+G+GMT+  ++ +LGTIA+SGT EF + L  +A  D  +IGQFGVGFYSA++VA++V V T+   H  DE  +WES+  GSFTV          RGT++TL+L++++
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKDKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGSFTVETITKA---SRGTEITLHLRDEE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHEPC (Chaperone protein htpG OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=htpG PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.157e-43
Identity = 92/187 (49.20%), Postives = 132/187 (70.59%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +G  EL +RI  DK   T+TI D+G+GMT+  ++ +LGTIA+SGT EF + L  +A  D  +IGQFGVGFYSA++VA++V V T+   H  DE  +WES+  GSFTV          RGT++TL+L++++
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKDKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGSFTVETITKA---SRGTEITLHLRDEE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHEPA (Chaperone protein htpG OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=htpG PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.157e-43
Identity = 93/187 (49.73%), Postives = 133/187 (71.12%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQA--GADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+E+LT+ +  +G  EL +RI  DK   T+TI D+GIGMT+  ++ +LGTIA+SGT +F + L      D  +IGQFGVGFYS+++VA+RV V T+   H+ DE  +WES   G FTV   +S +   RGT++TL+L++D+
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYEALTNDNLYEGDGELRVRISADKEKGTVTIEDNGIGMTRDGVIEHLGTIAKSGTADFFKKLSGDESKDSQLIGQFGVGFYSSFIVADRVTVRTRAAGHSADEAVLWESAGEGDFTV-ETISKQT--RGTEITLHLRDDE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHEON (Chaperone protein htpG OS=Shewanella oneidensis GN=htpG PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.511e-43
Identity = 92/187 (49.20%), Postives = 132/187 (70.59%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +G  EL +RI  DK   T+TI D+G+GMT+  ++ +LGTIA+SGT EF + L  +A  D  +IGQFGVGFYSA++VA++V V T+   H  +E  +WES+  GSFTV          RGT++TL+L++D+
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKANEAVLWESEGEGSFTVETITKAT---RGTEITLHLRDDE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHEHH (Chaperone protein htpG OS=Shewanella halifaxensis (strain HAW-EB4) GN=htpG PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.511e-43
Identity = 92/187 (49.20%), Postives = 130/187 (69.52%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQA--GADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+E+LT+ +  +G  EL +RI  DK   T+TI D+GIGMT+  ++ +LGTIA+SGT EF + +      D  +IGQFGVGFYS+++VA+RV V T+   H+ DE  +WES   G FTV          RGT++TL+L++D+
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYEALTNDALYEGDGELRVRISADKEKGTVTIEDNGIGMTRDGVIEHLGTIAKSGTAEFFKNMSGDESKDSQLIGQFGVGFYSSFIVADRVTVRTRAAGHSADEAVLWESAGEGDFTVETITK---QSRGTEITLHLRDDE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_RALEH (Chaperone protein htpG OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=htpG PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.511e-43
Identity = 94/186 (50.54%), Postives = 129/186 (69.35%), Query Frame = 1
Query:  118 ADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKH---NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            A  ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++ + S L+   +L IRI  D   +TLTI D+GIGM++ + ++NLGTIARSGTKEF + L      D ++IGQFGVGFYSA++VA++V V T+      ++   WES   G FT+      E   RGT +TL+L+E +
Sbjct:    3 APHETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADAKARTLTITDNGIGMSRDEAIHNLGTIARSGTKEFFQQLSGDQQKDAALIGQFGVGFYSAFIVADKVTVETRRAGLGAEDAVRWESTGDGEFTIDAIARNE---RGTTITLHLREGE 185          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_BORA1 (Chaperone protein htpG OS=Bordetella avium (strain 197N) GN=htpG PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.511e-43
Identity = 93/184 (50.54%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  118 ADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            A +ET  FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++     L G  EL IR+  DKA +T+TI D+GIG+++ + + NLGTIARSGT+EF   L      D  +IGQFGVGFYS+++VA+RV V++ +   DE   WES   G F++    S E   RGT + L+L+ D+
Sbjct:    5 ATSETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPELLAGDSELAIRVSYDKAARTITIADNGIGLSREEAIANLGTIARSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADRVSVLSRRAGSDEAIRWESDGQGEFSI---ASAEKATRGTDVVLHLRADE 185          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_AERS4 (Chaperone protein htpG OS=Aeromonas salmonicida (strain A449) GN=htpG PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.577e-43
Identity = 95/183 (51.91%), Postives = 133/183 (72.68%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQA--GADVSMIGQFGVGFYSAYLVAERVVVTTK--HNDDEQYI-WESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            ET  FQ E+ QLLSL+ ++ YSNKE+FLRELISN+SDA DK+RF++L+D S  +   +L +R++ DK N+TLTI D+GIGMT+  ++ +LGTIA+SGT EF + L    G D  +IGQFGVGFYSA++VA++V V ++      EQ + WES+  GSFTV  DV+ E  GRGT + L+L+ ++
Sbjct:    8 ETHGFQTEVKQLLSLMAHSLYSNKEVFLRELISNASDAADKLRFKALSDASLFENDGQLRVRLVVDKENRTLTISDNGIGMTRDQVIEHLGTIAKSGTAEFFKNLSGDQGRDSQLIGQFGVGFYSAFIVADKVTVVSRAAGTAPEQGVQWESEGEGSFTVA-DVTKE--GRGTDVILHLRAEE 187          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHESR (Chaperone protein htpG OS=Shewanella sp. (strain MR-7) GN=htpG PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.365e-43
Identity = 91/187 (48.66%), Postives = 132/187 (70.59%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +G  EL +RI  DK   T+TI D+G+GMT+  ++ +LGTIA+SGT EF + L  +A  D  +IGQFGVGFYSA++VA++V V T+   H  +E  +WES+  GSFTV          RGT++TL+L++++
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKANEAVLWESEGEGSFTVDTITKA---SRGTEITLHLRDEE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHESM (Chaperone protein htpG OS=Shewanella sp. (strain MR-4) GN=htpG PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.365e-43
Identity = 91/187 (48.66%), Postives = 132/187 (70.59%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +G  EL +RI  DK   T+TI D+G+GMT+  ++ +LGTIA+SGT EF + L  +A  D  +IGQFGVGFYSA++VA++V V T+   H  +E  +WES+  GSFTV          RGT++TL+L++++
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKANEAVLWESEGEGSFTVDTITKA---SRGTEITLHLRDEE 184          
The following BLAST results are available for this feature:
BLAST of FC920358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_SHESW1.157e-4349.20Chaperone protein htpG OS=Shewanella sp. (strain W... [more]
HTPG_SHEPC1.157e-4349.20Chaperone protein htpG OS=Shewanella putrefaciens ... [more]
HTPG_SHEPA1.157e-4349.73Chaperone protein htpG OS=Shewanella pealeana (str... [more]
HTPG_SHEON1.511e-4349.20Chaperone protein htpG OS=Shewanella oneidensis GN... [more]
HTPG_SHEHH1.511e-4349.20Chaperone protein htpG OS=Shewanella halifaxensis ... [more]
HTPG_RALEH1.511e-4350.54Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_BORA11.511e-4350.54Chaperone protein htpG OS=Bordetella avium (strain... [more]
HTPG_AERS42.577e-4351.91Chaperone protein htpG OS=Aeromonas salmonicida (s... [more]
HTPG_SHESR3.365e-4348.66Chaperone protein htpG OS=Shewanella sp. (strain M... [more]
HTPG_SHESM3.365e-4348.66Chaperone protein htpG OS=Shewanella sp. (strain M... [more]

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Properties
Property NameValue
Genbank descriptionC32007C07EF RVDevelop1 Citrus clementina cDNA clone C32007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920358 ID=FC920358; Name=FC920358; organism=Citrus clementina; type=EST; length=765bp
TTCGCTTTATAAAAATCTCTCTGCGCAAGCAAAAGCAAAAGCAAAAGCAA
TTCTCTTCGGTATTCTTGTTTCCAATTTTTTTCTTTTGTTTATTCTGTGT
TGTGAGGAAGAGCAATGGCGGACACTGAGACATTCGCATTCCAGGCAGAG
ATCAACCAGCTGTTGAGTTTGATCATCAATACTTTCTACAGCAACAAGGA
GATTTTCCTTCGTGAACTCATCAGCAACTCCTCTGATGCTTTGGACAAGA
TTCGATTCGAGAGCCTGACGGACAAGAGCAAGCTCGATGGACAACCAGAG
CTTTTCATCAGAATCATCCCTGACAAGGCTAACAAGACGCTCACTATTGT
TGATAGCGGTATCGGCATGACCAAAGCAGATTTGGTAAATAATTTGGGTA
CAATTGCGAGATCCGGGACCAAGGAGTTTATGGAGGCTTTGCAGGCCGGG
GCTGATGTGTCAATGATTGGTCAATTTGGTGTTGGTTTCTATTCGGCTTA
CCTTGTTGCTGAGAGGGTTGTTGTGACTACAAAGCACAATGACGATGAGC
AATACATCTGGGAATCACAAGCTGGTGGTTCTTTCACTGTTACCAGGGAT
GTTAGTGGAGAGCCCCTTGGTAGAGGTACCAAGATGACTCTGTACCTCAA
GGAGGATCAGCTTGAGTACTTGGAGGAGAGGAGAATTAGGACCTTGTGAA
GAGCACTCTGAATCATCAGCTCCCCTATTACTCTGGACTGAGAGACACTG
AGAAGAATTAGCGAT
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