FC920358

Overview
NameFC920358
Unique NameFC920358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHESA (Chaperone protein htpG OS=Shewanella sp. (strain ANA-3) GN=htpG PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.365e-43
Identity = 91/187 (48.66%), Postives = 132/187 (70.59%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +G  EL +RI  DK   T+TI D+G+GMT+  ++ +LGTIA+SGT EF + L  +A  D  +IGQFGVGFYSA++VA++V V T+   H  +E  +WES+  GSFTV          RGT++TL+L++++
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKANEAVLWESEGEGSFTVDTITKA---SRGTEITLHLRDEE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CUPTR (Chaperone protein htpG OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=htpG PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.365e-43
Identity = 95/186 (51.08%), Postives = 127/186 (68.28%), Query Frame = 1
Query:  118 ADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKH---NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            A  ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++ + S L+   +L IRI  D   +TL I D+GIGM++ + + NLGTIARSGTKEF + L      D ++IGQFGVGFYSA++VA++V V T+      +E   WES   G FTV      E   RGT +TL+L+E +
Sbjct:    3 APHETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADAKARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLSGDQQKDAALIGQFGVGFYSAFIVADKVTVETRRAGLGAEEAVRWESTGDGEFTVDAIARAE---RGTTITLHLREGE 185          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CHRVO (Chaperone protein htpG OS=Chromobacterium violaceum GN=htpG PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.365e-43
Identity = 93/184 (50.54%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  118 ADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYI-WESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            A  ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE L      +  PEL IRI  DK  +T+TI D+GIGM++ ++V+++GTIA+SGTK F E L      D  +IGQFGVGFYSA++VA++V +TT+   + + + WES   G +T+    S E   RGT++ L+LKE +
Sbjct:    3 AQKETLGFQTEVKQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEGLAKPELFENDPELKIRIAFDKDARTITIADNGIGMSRDEVVSHIGTIAKSGTKSFFEQLSGDEKKDAHLIGQFGVGFYSAFIVADKVTLTTRRAGEAEAVRWESHGEGEYTLE---SVEKAERGTEIVLHLKEGE 183          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_SHEDO (Chaperone protein htpG OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=htpG PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.395e-43
Identity = 92/190 (48.42%), Postives = 134/190 (70.53%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSF---TVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M+  ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LTD +  +G  EL +R+  DK   T+TI D+GIGMT+  ++ +LGTIA+SGTKEF   L  +A  D  +IGQFGVGFYSA++VA++V V T+   H  +E  +WES+  GSF   T+T++       RGT++ L+L++++
Sbjct:    1 MSQQETHGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTDDALYEGDGELRVRVSTDKEKGTVTISDNGIGMTRDSVIEHLGTIAKSGTKEFFNNLSGEANKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHPANEGVLWESEGEGSFNVETITKN------SRGTEIVLHLRDEE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_RHORT (Chaperone protein htpG OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=htpG PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.740e-43
Identity = 94/183 (51.37%), Postives = 133/183 (72.68%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ-----AGADVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            ET +FQAE+++LL +++++ YS+++IFLRELISN+SDA DK+R+E LT  + L+G     IR+  D    TLTI D+GIGM + +L+ NLGTIARSGT+ F EAL+     A  DVS+IGQFGVGFYSA++VA++V VVT +  + + + W S   GSF+V+ +V G   GRG  +TL+L+ED
Sbjct:    4 ETLSFQAEVSKLLDIVVHSLYSDRKIFLRELISNASDACDKLRYEGLTQPALLEGDGAFRIRLSIDAEAGTLTIADNGIGMNRHELIENLGTIARSGTQAFAEALKAKSQAASGDVSLIGQFGVGFYSAFMVADKVEVVTRRAGEAQGWRWSSDGKGSFSVS-EVEG--AGRGAAITLHLRED 183          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_NITEU (Chaperone protein htpG OS=Nitrosomonas europaea GN=htpG PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.740e-43
Identity = 91/183 (49.73%), Postives = 131/183 (71.58%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTKH---NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            E   FQAE NQLL L+I++ YSNKEIFLRELISN+SDA DK+RFE L+D +  +  P+L IRI  DK  +T+TI+D+GIGM++ +++NN+GTIA+SGT+EF ++L      D ++IGQFGVGFYSA++VA++V +TT+      +    WES   G +T+    + E   RGT++ L+L+E +
Sbjct:    8 EHLNFQAEANQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEGLSDAALYESDPDLKIRIAYDKEARTITIIDNGIGMSRQEVINNIGTIAKSGTREFFDSLTGDQAKDANLIGQFGVGFYSAFIVADKVTLTTRRAGLTIEHGVRWESGGEGEYTLE---TVEKPDRGTEIVLHLREGE 187          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_METFK (Chaperone protein htpG OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=htpG1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.740e-43
Identity = 90/181 (49.72%), Postives = 128/181 (70.72%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTKH-NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            ET  FQAE+ QLL L+I++ YSNKEI LRELISN+SDA DK+RFE+L D S      +L IR+  DK  +T+TI D+GIGM++ +++NN+GTIA+SGTKEF+++L      D ++IGQFGVGFYSA+++A++V +TT+    +E   WES   G +T+      E   RGT + L+L+E +
Sbjct:    9 ETLGFQAEVKQLLQLMIHSLYSNKEIVLRELISNASDAADKLRFEALADNSLYGNDSDLKIRVSFDKQARTITISDNGIGMSREEVINNIGTIAKSGTKEFLQSLTGDQAKDANLIGQFGVGFYSAFIIADKVTLTTRRAGSNEAVRWESTGEGDYTLE---PAEKESRGTDIVLHLREGE 186          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_ENTS8 (Chaperone protein htpG OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=htpG PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.740e-43
Identity = 93/187 (49.73%), Postives = 133/187 (71.12%), Query Frame = 1
Query:  115 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTKH---NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            M   ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L+     +G  +L +R+  DK  +TLTI D+GIGMT+ +++++LGTIA+SGTK F+E++      D  +IGQFGVGFYSA++VA++V V T+    + DE   WES+  G +TV  D+S     RGT++TL+L+E +
Sbjct:    1 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSSPDLYEGDGDLRVRVSFDKDKRTLTIADNGIGMTRDEVIDHLGTIAKSGTKAFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGVSADEAVFWESEGEGEYTVA-DIS--KADRGTEITLHLREGE 184          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_ALHEH (Chaperone protein htpG OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.740e-43
Identity = 94/186 (50.54%), Postives = 128/186 (68.82%), Query Frame = 1
Query:  118 ADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKH---NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            A  ET  FQAE+ QLL L+I++ YSNK+IFLRELISN+SDA+DK+RF+SL D+S L+G+ +L IR+  DK  +T+T+ D+GIGMT+ ++  NLGTIARSGTK F++ L      D  +IGQFGVGFYSA++VAE V V T+      +    W S   G++T+  +   E   RGT++ L L E Q
Sbjct:    5 AHKETLEFQAEVQQLLHLMIHSLYSNKDIFLRELISNASDAIDKLRFQSLQDESLLEGEGDLRIRVSVDKDARTITVADNGIGMTRDEVAENLGTIARSGTKAFLDQLTGDQQKDAKLIGQFGVGFYSAFVVAEHVTVHTRKAGLGAEHGVRWSSDGKGAYTLENEEVAE---RGTRVVLTLPESQ 187          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_THIDA (Chaperone protein htpG OS=Thiobacillus denitrificans (strain ATCC 25259) GN=htpG PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.497e-43
Identity = 91/188 (48.40%), Postives = 133/188 (70.74%), Query Frame = 1
Query:  112 AMADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKH---NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            A +  ET  FQAE+ QLL L+I++ YSNK+IFLRELISN+SDA DK+RFE+L+D +  +  PEL IRI  D+  +TLTI D+GIGM++ ++++++GTIA+SGT+EF   L      D ++IGQFGVGFYSA++VA+RV +TT+      +    WES+  G +T+    + E   RGT++ L+L+E +
Sbjct:    3 ATSSKETLGFQAEVKQLLQLMIHSLYSNKDIFLRELISNASDAADKLRFEALSDAALFENDPELKIRIAFDRDARTLTISDNGIGMSRQEVIDHIGTIAKSGTREFFSQLSGDQKKDAALIGQFGVGFYSAFIVADRVTLTTRRAGLTAEHGVRWESEGAGDYTLE---TVEKPQRGTEIVLHLREGE 187          
The following BLAST results are available for this feature:
BLAST of FC920358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_SHESA3.365e-4348.66Chaperone protein htpG OS=Shewanella sp. (strain A... [more]
HTPG_CUPTR3.365e-4351.08Chaperone protein htpG OS=Cupriavidus taiwanensis ... [more]
HTPG_CHRVO3.365e-4350.54Chaperone protein htpG OS=Chromobacterium violaceu... [more]
HTPG_SHEDO4.395e-4348.42Chaperone protein htpG OS=Shewanella denitrificans... [more]
HTPG_RHORT5.740e-4351.37Chaperone protein htpG OS=Rhodospirillum rubrum (s... [more]
HTPG_NITEU5.740e-4349.73Chaperone protein htpG OS=Nitrosomonas europaea GN... [more]
HTPG_METFK5.740e-4349.72Chaperone protein htpG OS=Methylobacillus flagella... [more]
HTPG_ENTS85.740e-4349.73Chaperone protein htpG OS=Enterobacter sakazakii (... [more]
HTPG_ALHEH5.740e-4350.54Chaperone protein htpG OS=Alkalilimnicola ehrliche... [more]
HTPG_THIDA7.497e-4348.40Chaperone protein htpG OS=Thiobacillus denitrifica... [more]

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Properties
Property NameValue
Genbank descriptionC32007C07EF RVDevelop1 Citrus clementina cDNA clone C32007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920358 ID=FC920358; Name=FC920358; organism=Citrus clementina; type=EST; length=765bp
TTCGCTTTATAAAAATCTCTCTGCGCAAGCAAAAGCAAAAGCAAAAGCAA
TTCTCTTCGGTATTCTTGTTTCCAATTTTTTTCTTTTGTTTATTCTGTGT
TGTGAGGAAGAGCAATGGCGGACACTGAGACATTCGCATTCCAGGCAGAG
ATCAACCAGCTGTTGAGTTTGATCATCAATACTTTCTACAGCAACAAGGA
GATTTTCCTTCGTGAACTCATCAGCAACTCCTCTGATGCTTTGGACAAGA
TTCGATTCGAGAGCCTGACGGACAAGAGCAAGCTCGATGGACAACCAGAG
CTTTTCATCAGAATCATCCCTGACAAGGCTAACAAGACGCTCACTATTGT
TGATAGCGGTATCGGCATGACCAAAGCAGATTTGGTAAATAATTTGGGTA
CAATTGCGAGATCCGGGACCAAGGAGTTTATGGAGGCTTTGCAGGCCGGG
GCTGATGTGTCAATGATTGGTCAATTTGGTGTTGGTTTCTATTCGGCTTA
CCTTGTTGCTGAGAGGGTTGTTGTGACTACAAAGCACAATGACGATGAGC
AATACATCTGGGAATCACAAGCTGGTGGTTCTTTCACTGTTACCAGGGAT
GTTAGTGGAGAGCCCCTTGGTAGAGGTACCAAGATGACTCTGTACCTCAA
GGAGGATCAGCTTGAGTACTTGGAGGAGAGGAGAATTAGGACCTTGTGAA
GAGCACTCTGAATCATCAGCTCCCCTATTACTCTGGACTGAGAGACACTG
AGAAGAATTAGCGAT
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