FC920360

Overview
NameFC920360
Unique NameFC920360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10332 contig Ccv1_Contig10332:2..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_DICDI (Calreticulin OS=Dictyostelium discoideum GN=crtA PE=1 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 7.812e-64
Identity = 112/187 (59.89%), Postives = 143/187 (76.47%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEV-PCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V F++ FD  WESRWV SDW K++  +G+  +TAGKW GD N KGIQTSED RFYA+SA+FP FSNK K LV Q++VK+EQK+DCGG Y+KLL  ++DQ  F G++ YSIMFGPD+CG ++K+VH IL Y G N LIKKE+   ETDQLTH YT ++ PD TY +L+DN E Q+G+L  DW+LLP +
Sbjct:   21 VHFKDTFDNDWESRWVVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVKNEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCG-ASKRVHVILNYKGKNHLIKKEINKVETDQLTHQYTLVISPDNTYKVLVDNKEIQAGNLADDWELLPSK 206          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.613e-63
Identity = 115/189 (60.85%), Postives = 136/189 (71.96%), Query Frame = 3
Query:  105 FFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLL--SGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            +F+E FD  W  RW  S WK  + +AGE+  TAGKW GD   DKGIQT  D +F+AISA     F N  K  V QFSVKHEQ LDCGGGY+K++  + E    +FGGDTPYSIMFGPDICGYST+KVH ILTY G N LIKK++  ETDQLTHVYT +++PD TY +LID  E  SGSLY DWD+LPP+
Sbjct:   21 YFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDAEADKGIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVVPATSEKQMGEFGGDTPYSIMFGPDICGYSTRKVHVILTYKGKNYLIKKDIKAETDQLTHVYTLVIKPDNTYQVLIDLKEVASGSLYEDWDMLPPK 209          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_CRIGR (Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.422e-57
Identity = 106/189 (56.08%), Postives = 136/189 (71.96%), Query Frame = 3
Query:  102 VFFEERFDEG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V+F+E+F +G  W +RWV S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL  G +DQK   GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD TY + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDDWTNRWVESKHKSD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPGSLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_RAT (Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.208e-56
Identity = 105/189 (55.56%), Postives = 136/189 (71.96%), Query Frame = 3
Query:  102 VFFEERFDEG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            ++F+E+F +G  W +RWV S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL  G +DQK   GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD TY + IDN + +SGSL  DWD LPP+
Sbjct:   21 IYFKEQFLDGDAWTNRWVESKHKSD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPGGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_BOMMO (Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.578e-56
Identity = 105/186 (56.45%), Postives = 136/186 (73.12%), Query Frame = 3
Query:  102 VFFEERF-DEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLP 653
            VFFEE+F D+ WES WV S+    E   G++  TAGK+  DP +DKG++TSED RFYA+S +F  FSN+ K LV QF+VKHEQ +DCGGGY+K+   +++QK   G+TPY IMFGPDICG  TKKVH I +Y G N LIKK++ C+ D  TH+YT I++PD TY +LIDN + +SG L +DWD LP
Sbjct:   21 VFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLP 204          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_MACFU (Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.515e-56
Identity = 104/189 (55.03%), Postives = 134/189 (70.90%), Query Frame = 3
Query:  102 VFFEERF--DEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V+F+E+F   +GW SRW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQ    GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD TY + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTSRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_MACFA (Calreticulin OS=Macaca fascicularis GN=CALR PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.515e-56
Identity = 104/189 (55.03%), Postives = 134/189 (70.90%), Query Frame = 3
Query:  102 VFFEERF--DEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V+F+E+F   +GW SRW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQ    GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD TY + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTSRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_HUMAN (Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.515e-56
Identity = 104/189 (55.03%), Postives = 134/189 (70.90%), Query Frame = 3
Query:  102 VFFEERF--DEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V+F+E+F   +GW SRW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQ    GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD TY + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTSRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_CERAE (Calreticulin OS=Cercopithecus aethiops GN=CALR PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.515e-56
Identity = 104/189 (55.03%), Postives = 134/189 (70.90%), Query Frame = 3
Query:  102 VFFEERF--DEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V+F+E+F   +GW SRW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQ    GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD TY + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTSRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.590e-56
Identity = 104/189 (55.03%), Postives = 136/189 (71.96%), Query Frame = 3
Query:  102 VFFEERFDEG--WESRWVTSDWKKDENTAGEWNYTAGKWNGD-PNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            ++F+E+F +G  W +RWV S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA+F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQK   GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD TY + IDN + +SGSL  DWD LPP+
Sbjct:   21 IYFKEQFLDGDAWTNRWVESKHKSD---FGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206          
The following BLAST results are available for this feature:
BLAST of FC920360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALR_DICDI7.812e-6459.89Calreticulin OS=Dictyostelium discoideum GN=crtA P... [more]
CALR_CHLRE6.613e-6360.85Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
CALR_CRIGR5.422e-5756.08Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV... [more]
CALR_RAT1.208e-5655.56Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=... [more]
CALR_BOMMO1.578e-5656.45Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1[more]
CALR_MACFU3.515e-5655.03Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=... [more]
CALR_MACFA3.515e-5655.03Calreticulin OS=Macaca fascicularis GN=CALR PE=2 S... [more]
CALR_HUMAN3.515e-5655.03Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1[more]
CALR_CERAE3.515e-5655.03Calreticulin OS=Cercopithecus aethiops GN=CALR PE=... [more]
CALR_MOUSE4.590e-5655.03Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32007C09EF RVDevelop1 Citrus clementina cDNA clone C32007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920360 ID=FC920360; Name=FC920360; organism=Citrus clementina; type=EST; length=669bp
GAGAGCACTTCCTCTCTCTCGCTCTAAAAATGGCGAAATTAAACCCTAGC
TTTCTCTCTCTAACTCTCCTCACTATCTTCCTGACAATTGCCTCTGCTCA
CGTCTTCTTCGAAGAACGCTTTGACGAGGGATGGGAAAGCCGGTGGGTTA
CATCTGATTGGAAGAAAGATGAGAACACGGCTGGAGAATGGAACTACACT
GCTGGGAAATGGAATGGGGACCCGAATGATAAAGGTATTCAAACTAGTGA
AGACTACAGGTTCTATGCTATTTCAGCTGAATTCCCTGAATTCAGCAACA
AGGACAAGACACTCGTGTTCCAGTTTTCTGTTAAGCACGAACAGAAGCTT
GACTGTGGTGGTGGCTACATGAAGTTGCTTAGTGGCGAAGTTGATCAGAA
GAAATTTGGTGGTGATACCCCTTACAGTATCATGTTTGGACCAGATATCT
GTGGTTATAGCACTAAGAAAGTGCATGCCATTCTTACCTACAATGGAACA
AACAAATTGATCAAGAAGGAAGTACCATGTGAGACTGACCAACTCACTCA
TGTTTATACTTTCATCCTCCGTCCAGATGCTACTTACAGCATCCTCATTG
ACAATGTGGAGAAACAATCTGGTAGCTTGTACTCTGATTGGGATCTCCTC
CCTCCAAGACCATNCAGGA
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