FC920360

Overview
NameFC920360
Unique NameFC920360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10332 contig Ccv1_Contig10332:2..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.744e-55
Identity = 103/189 (54.50%), Postives = 133/189 (70.37%), Query Frame = 3
Query:  102 VFFEERF--DEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V+F+E+F   +GW  RW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK + LV QF+VKHEQ +DCGGGY+KL    +DQK   GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD TY + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTERWIESKHKSD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQPLVVQFTVKHEQNIDCGGGYVKLFPAGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 8.657e-55
Identity = 102/189 (53.97%), Postives = 133/189 (70.37%), Query Frame = 3
Query:  102 VFFEERF--DEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V+F+E+F   +GW  RW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQ    GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RP+ TY + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTERWIESKHKPD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPAGLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPNNTYEVKIDNSQVESGSLEDDWDFLPPK 206          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_EUGGR (Calreticulin OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.637e-53
Identity = 104/188 (55.32%), Postives = 134/188 (71.28%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            ++++E F+  WE+RW  S  K D    G++  T+GK+ GD   D GIQTS+D +FYAIS+     FSN+ K LV QFSVKHEQ +DCGGGY+KLL   VD  KF GDTPY IMFGPDICG +TKK+H ILTY G N L KKE  CETD L+H YT +++ D TY +L+D V+K+SG+L  DW++L P+
Sbjct:   20 IYYKETFEPDWETRWTHSTAKSDY---GKFKLTSGKFYGDKAKDAGIQTSQDAKFYAISSPIASSFSNEGKDLVLQFSVKHEQDIDCGGGYLKLLPS-VDAAKFTGDTPYHIMFGPDICG-ATKKIHFILTYKGKNLLWKKEPRCETDTLSHTYTAVIKADRTYEVLVDQVKKESGTLEEDWEILKPK 202          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_CAEBR (Calreticulin OS=Caenorhabditis briggsae GN=crt-1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.637e-53
Identity = 103/189 (54.50%), Postives = 136/189 (71.96%), Query Frame = 3
Query:  102 VFFEERF-DEGWESRWVTSDWKKDENTAGEWNYTAGKW-NGDPNDKGIQTSEDYRFYAISAEFP-EFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V+F+E F D  WE RWV S  K D    G +  +AGK+ + +  D+GIQTS+D +FY+ +A+F  EFSNK KTLV Q++VKHEQ +DCGGGY+K++ G+ D   F G+TPY++MFGPDICG  T++VH IL Y G NKLIKKE+ C++D+LTH+YT IL  D TY + ID    Q+GSL  DWDLLP +
Sbjct:   17 VYFKEEFNDASWEKRWVQSKHKDD---FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKEFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRGDADLADFHGETPYNVMFGPDICG-PTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNADNTYEVKIDGESAQTGSLEEDWDLLPAK 201          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_DROME (Calreticulin OS=Drosophila melanogaster GN=Crc PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 5.252e-52
Identity = 101/188 (53.72%), Postives = 125/188 (66.49%), Query Frame = 3
Query:  102 VFFEERFD-EGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V+ +E FD E WE  W+ S  K      G++  T G +  D   DKGIQTS+D RFYA S +F  FSN+DK LV QFSVKHEQ +DCGGGY+KL    +DQ    G++PY IMFGPDICG  TKKVH I +Y G N LI K++ C+ D  TH YT I+RPD TY +LIDN + +SG+L  DWD L P+
Sbjct:   21 VYLKENFDNENWEDTWIYS--KHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASRKFDGFSNEDKPLVVQFSVKHEQNIDCGGGYVKLFDCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSYKGKNHLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDWDFLAPK 206          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_CAEEL (Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.252e-52
Identity = 101/189 (53.44%), Postives = 135/189 (71.43%), Query Frame = 3
Query:  102 VFFEERF-DEGWESRWVTSDWKKDENTAGEWNYTAGKW-NGDPNDKGIQTSEDYRFYAISAEFP-EFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V+F+E F D  WE RWV S  K D    G +  +AGK+ + +  D+GIQTS+D +FY+ +A+F  +FSNK KTLV Q++VKHEQ +DCGGGY+K++  + D   F G+TPY++MFGPDICG  T++VH IL Y G NKLIKKE+ C++D+LTH+YT IL  D TY + ID    Q+GSL  DWDLLP +
Sbjct:   17 VYFKEEFNDASWEKRWVQSKHKDD---FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICG-PTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAK 201          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.996e-51
Identity = 96/189 (50.79%), Postives = 132/189 (69.84%), Query Frame = 3
Query:  102 VFFEERF-DEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            ++F+E F D+ WE RW+ S  K D    G+W  + GK+ GD   DKG++T++D +FY+I A+F + FSNK K+LV QFSVKHEQ +DCGGGY+KL++ +V+ +   G+TPY IMFGPDICG  TKKVH I  Y   N +IKK++ C+ D  TH+YT I+  D TY + ID  + +SG L +DWD LPP+
Sbjct:   19 IYFKEDFSDDDWEKRWIKSKHKDD---FGKWEISHGKFYGDAVKDKGLKTTQDAKFYSIGAKFDKSFSNKGKSLVIQFSVKHEQDIDCGGGYVKLMASDVNLEDSHGETPYHIMFGPDICGPGTKKVHVIFHYKDRNHMIKKDIRCKDDVFTHLYTLIVNSDNTYEVQIDGEKAESGELEADWDFLPPK 204          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 7.098e-49
Identity = 92/188 (48.94%), Postives = 126/188 (67.02%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V+F E F       WV S +  ++   GE+   AGK   DP  D G++T++D RFY I+ +  E FSN+ KT+V QF+VK ++ + CGG Y+KLL  ++D KKF G++PY IMFGPDICG +TKKVH I  Y G N LIKKE+PC+ D  TH+YT I+ P+  Y +L+DN + + GSL  DWD+LPP+
Sbjct:   19 VWFSETFPNESIENWVQSTYNAEKQ--GEFKVEAGKSPVDPIEDLGLKTTQDARFYGIARKISEPFSNRGKTMVLQFTVKFDKTVSCGGAYIKLLGSDIDPKKFHGESPYKIMFGPDICGMATKKVHVIFNYKGKNHLIKKEIPCKDDLKTHLYTLIVNPNNKYEVLVDNAKVEEGSLEDDWDMLPPK 204          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR3_MOUSE (Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.283e-47
Identity = 91/185 (49.19%), Postives = 125/185 (67.57%), Query Frame = 3
Query:  102 VFFEERFDEG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDL 647
            V+F+E F +G  W +RWV S    +++  G +  ++GK+ G    DKG+QT+++ RFYAISA F  FSNK KTLV Q++VKHEQK+DCGGGY+K+   ++DQKK  G + Y IMFGPDICG+  KKVH IL +       KK + C+ D  TH+YT ILRPD +Y + +D    +SGS+  DW+L
Sbjct:   21 VYFQEEFLDGERWRNRWVQST---NDSQFGHFRVSSGKFYGHKEKDKGLQTTQNSRFYAISASFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPSDLDQKKMNGKSQYYIMFGPDICGFDIKKVHVILYFKNQYHENKKPIRCKVDGFTHLYTLILRPDLSYEVKVDGQSIESGSIEYDWNL 202          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR3_BOVIN (Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.644e-47
Identity = 90/185 (48.65%), Postives = 121/185 (65.41%), Query Frame = 3
Query:  102 VFFEERFDEG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDL 647
            V+F+E F +G  W +RWV S    +++  G +  ++G + G    DKG+QT+++ RFYAISA F  FSNK KTL+ Q++VKHEQK+DCGGGY+KL   +VDQK   G + Y IMFGPDICG+  K VH IL +       KK + C+ D  TH+YT +LRPD TY + ID    +SGS+  DW L
Sbjct:   21 VYFQEEFLDGERWRNRWVHST---NDSQFGHFRLSSGNFYGHKEKDKGLQTTQNSRFYAISARFKPFSNKGKTLIIQYTVKHEQKMDCGGGYIKLFPADVDQKNLNGKSQYYIMFGPDICGFDIKTVHVILHFKNQYHANKKSIRCKVDSFTHLYTLVLRPDLTYEVKIDGQSIESGSIEYDWQL 202          
The following BLAST results are available for this feature:
BLAST of FC920360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALR_RABIT1.744e-5554.50Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1... [more]
CALR_BOVIN8.657e-5553.97Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR_EUGGR3.637e-5355.32Calreticulin OS=Euglena gracilis PE=2 SV=1[more]
CALR_CAEBR3.637e-5354.50Calreticulin OS=Caenorhabditis briggsae GN=crt-1 P... [more]
CALR_DROME5.252e-5253.72Calreticulin OS=Drosophila melanogaster GN=Crc PE=... [more]
CALR_CAEEL5.252e-5253.44Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE... [more]
CALR_ONCVO1.996e-5150.79Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 ... [more]
CALR_SCHMA7.098e-4948.94Calreticulin OS=Schistosoma mansoni PE=2 SV=2[more]
CALR3_MOUSE2.283e-4749.19Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1[more]
CALR3_BOVIN6.644e-4748.65Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32007C09EF RVDevelop1 Citrus clementina cDNA clone C32007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920360 ID=FC920360; Name=FC920360; organism=Citrus clementina; type=EST; length=669bp
GAGAGCACTTCCTCTCTCTCGCTCTAAAAATGGCGAAATTAAACCCTAGC
TTTCTCTCTCTAACTCTCCTCACTATCTTCCTGACAATTGCCTCTGCTCA
CGTCTTCTTCGAAGAACGCTTTGACGAGGGATGGGAAAGCCGGTGGGTTA
CATCTGATTGGAAGAAAGATGAGAACACGGCTGGAGAATGGAACTACACT
GCTGGGAAATGGAATGGGGACCCGAATGATAAAGGTATTCAAACTAGTGA
AGACTACAGGTTCTATGCTATTTCAGCTGAATTCCCTGAATTCAGCAACA
AGGACAAGACACTCGTGTTCCAGTTTTCTGTTAAGCACGAACAGAAGCTT
GACTGTGGTGGTGGCTACATGAAGTTGCTTAGTGGCGAAGTTGATCAGAA
GAAATTTGGTGGTGATACCCCTTACAGTATCATGTTTGGACCAGATATCT
GTGGTTATAGCACTAAGAAAGTGCATGCCATTCTTACCTACAATGGAACA
AACAAATTGATCAAGAAGGAAGTACCATGTGAGACTGACCAACTCACTCA
TGTTTATACTTTCATCCTCCGTCCAGATGCTACTTACAGCATCCTCATTG
ACAATGTGGAGAAACAATCTGGTAGCTTGTACTCTGATTGGGATCTCCTC
CCTCCAAGACCATNCAGGA
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