FC920360

Overview
NameFC920360
Unique NameFC920360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10332 contig Ccv1_Contig10332:2..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR3_HUMAN (Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.933e-46
Identity = 90/185 (48.65%), Postives = 124/185 (67.03%), Query Frame = 3
Query:  102 VFFEERFDEG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDL 647
            V+F+E F +G  W +RW+ S    +++  G +  ++GK+ G    DKG+QT+++ RFYAISA F  FSNK KTLV Q++VKHEQK+DCGGGY+K+   ++DQK   G + Y IMFGPDICG+  KKVH IL +       KK + C+ D  TH+YT ILRPD +Y + ID    +SGS+  DW+L
Sbjct:   21 VYFQEEFLDGEHWRNRWLQST---NDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQKNLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDLSYDVKIDGQSIESGSIEYDWNL 202          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX_ASPFU (Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_4G12850 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.289e-28
Identity = 78/196 (39.80%), Postives = 111/196 (56.63%), Query Frame = 3
Query:  108 FEERFDEGWESRWVTSDWKKDENTAGE-WNYTAGKW--------NGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLL--SGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNG--TNKLIKKEV----PCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDW 641
            F E+F   W+SRW  S  KK+++ + E W Y  G+W        NG   DKG+        +AISA+FP+   NK KTLV Q+ VK +  L CGG YMKLL  + ++  ++F   TPY IMFGPD CG +T KVH I  +    T +  +K +       T +LT +YT I++PD ++ ILID    ++G+L  D+
Sbjct:   50 FLEQFTADWDSRWTPSHAKKEDSKSEEDWAYV-GEWAVEEPTVLNGMVGDKGLVVKNVAAHHAISAKFPKKIDNKGKTLVVQYEVKPQNSLVCGGAYMKLLQENKKLHAEEFSNATPYVIMFGPDKCG-ATNKVHFIFRHKNPKTGEYEEKHMTAPPAARTTKLTTLYTLIVKPDQSFQILIDGEAVKNGTLLEDF 243          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.477e-27
Identity = 78/193 (40.41%), Postives = 103/193 (53.37%), Query Frame = 3
Query:  108 FEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVD---QKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNK------LIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP 656
            F E FDE ++ RW+ SD K+D N  G W +     +   +D G+  SE  R YAI  E  E  S KD T+V QF  + +  L+CGG Y+K L  +      K+F  ++PYSIMFGPD CG +T KVH I  +            +K      +D+LTHVYT IL+PD    ILID  EK+  +  S  D  PP
Sbjct:   40 FYESFDEDFDGRWIVSD-KEDYN--GVWKHAKSDGH---DDYGLLVSEQARKYAIVKELAESVSLKDGTVVLQFETRLQNGLECGGAYIKYLRPQESGWKPKEFDNESPYSIMFGPDKCG-ATNKVHFIFKHKNPKSGEYVEHHLKYPPSVPSDKLTHVYTAILKPDNELQILIDGEEKKKANFLSSEDFEPP 225          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.592e-24
Identity = 71/192 (36.98%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  108 FEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEV---DQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNK------LIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLP 653
            F E FDE +E  W+ S+    E+  GEW ++  + +   +D G+  S+  R YAI  E  +    KD T+V Q+ V+ +  L+CGG Y+K L  +      K F  ++PYSIMFGPD CG +T KVH IL +            +K      +D+LTHVYT +++PD    ILID  EK+  +  S  D  P
Sbjct:   35 FYESFDESFEGSWIVSE---KEDYPGEWKHSKSEGH---DDYGLLVSDKARKYAIVKELEKPVELKDGTIVLQYEVRLQNGLECGGAYLKYLRPQDAGWTAKGFDNESPYSIMFGPDKCG-ATNKVHFILKHKNPKSGDYVEHHLKFPPSVPSDKLTHVYTAVIKPDNELVILIDGEEKKKANFLSSEDFEP 219          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX_RAT (Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.051e-24
Identity = 74/205 (36.10%), Postives = 106/205 (51.71%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGD-------PNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS--GEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP 656
            V+F + FD G  S W+ S  KKD+ T  E     GKW  D       P DKG+      + +AISA+  + F    K L+ Q+ V  +  ++CGG Y+KLLS   E++  +F   TPY+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT IL PD ++ IL+D     SG+L +  D+ PP
Sbjct:   70 VYFADSFDRGSLSGWILSKAKKDD-TDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTSELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLN--DMTPP 270          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX_PONAB (Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.051e-24
Identity = 75/205 (36.59%), Postives = 106/205 (51.71%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGD-------PNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSG--EVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP 656
            V+F + FD G  S W+ S  KKD+ T  E     GKW  D       P DKG+      + +AISA+  + F    K L+ Q+ V  +  ++CGG Y+KLLS   E++  +F   TPY+IMFGPD CG    K+H I  +      I +E   +          TD+ TH+YT IL PD ++ IL+D     SG+L +  D+ PP
Sbjct:   69 VYFADSFDRGTLSGWILSKAKKDD-TDDEIAKYDGKWEVDEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLN--DMTPP 269          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX_MOUSE (Calnexin OS=Mus musculus GN=Canx PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.903e-24
Identity = 74/205 (36.10%), Postives = 105/205 (51.22%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGD-------PNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS--GEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP 656
            V+F + FD G  S W+ S  KKD+ T  E     GKW  D       P DKG+      + +AISA+  + F    K L+ Q+ V  +  ++CGG Y+KLLS   E+   +F   TPY+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT IL PD ++ IL+D     SG+L +  D+ PP
Sbjct:   70 VYFADSFDRGSLSGWILSKAKKDD-TDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTAELSLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLN--DMTPP 270          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CLGN_BOVIN (Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.032e-23
Identity = 72/204 (35.29%), Postives = 103/204 (50.49%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGE--VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP 656
            V+F E FD G  + WV S  KKD+  A      G W     K N  P D+G+      + +AISA   + F   DK LV Q+ V  +  +DCGG Y+KLL+    ++ + F   T Y+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT ++ PD T+ +LID +    GSL    D++PP
Sbjct:   56 VYFTETFDSGRLAGWVLSKAKKDDIDAEISIYDGRWEIEELKENRIPGDRGLVLKSRAKHHAISAVLAKPFIFADKPLVVQYEVNFQDGIDCGGAYIKLLADTDGLNLENFYDKTSYTIMFGPDKCG-EDYKLHFIFRHKHPKTGVFEEKHAKPPDVDLKRFFTDRKTHLYTLVMNPDDTFEVLIDQIVVNKGSLLE--DVVPP 256          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX_HUMAN (Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.032e-23
Identity = 72/204 (35.29%), Postives = 105/204 (51.47%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSG--EVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP 656
            V+F + FD G  S W+ S  KKD+         G+W     K +  P DKG+      + +AISA+  + F    K L+ Q+ V  +  ++CGG Y+KLLS   E++  +F   TPY+IMFGPD CG    K+H I  +      I +E   +          TD+ TH+YT IL PD ++ IL+D     SG+L +  D+ PP
Sbjct:   69 VYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVEEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLN--DMTPP 269          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX_CANFA (Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.032e-23
Identity = 74/205 (36.10%), Postives = 106/205 (51.71%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGD-------PNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSG--EVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP 656
            V+F + FD G  S W+ S  KKD+ T  E     GKW  D       P DKG+      + +AISA+  + F    K L+ Q+ V  +  ++CGG Y+KLLS   E++  +F   TPY+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT IL PD ++ IL+D     SG+L +  D+ PP
Sbjct:   70 VYFADSFDRGTLSGWILSKAKKDD-TDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLN--DMTPP 270          
The following BLAST results are available for this feature:
BLAST of FC920360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALR3_HUMAN1.933e-4648.65Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2[more]
CALX_ASPFU5.289e-2839.80Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_... [more]
CALX_SOYBN4.477e-2740.41Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX_HELTU1.592e-2436.98Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
CALX_RAT6.051e-2436.10Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1[more]
CALX_PONAB6.051e-2436.59Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2[more]
CALX_MOUSE7.903e-2436.10Calnexin OS=Mus musculus GN=Canx PE=1 SV=1[more]
CLGN_BOVIN1.032e-2335.29Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1[more]
CALX_HUMAN1.032e-2335.29Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2[more]
CALX_CANFA1.032e-2336.10Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007C09EF RVDevelop1 Citrus clementina cDNA clone C32007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920360 ID=FC920360; Name=FC920360; organism=Citrus clementina; type=EST; length=669bp
GAGAGCACTTCCTCTCTCTCGCTCTAAAAATGGCGAAATTAAACCCTAGC
TTTCTCTCTCTAACTCTCCTCACTATCTTCCTGACAATTGCCTCTGCTCA
CGTCTTCTTCGAAGAACGCTTTGACGAGGGATGGGAAAGCCGGTGGGTTA
CATCTGATTGGAAGAAAGATGAGAACACGGCTGGAGAATGGAACTACACT
GCTGGGAAATGGAATGGGGACCCGAATGATAAAGGTATTCAAACTAGTGA
AGACTACAGGTTCTATGCTATTTCAGCTGAATTCCCTGAATTCAGCAACA
AGGACAAGACACTCGTGTTCCAGTTTTCTGTTAAGCACGAACAGAAGCTT
GACTGTGGTGGTGGCTACATGAAGTTGCTTAGTGGCGAAGTTGATCAGAA
GAAATTTGGTGGTGATACCCCTTACAGTATCATGTTTGGACCAGATATCT
GTGGTTATAGCACTAAGAAAGTGCATGCCATTCTTACCTACAATGGAACA
AACAAATTGATCAAGAAGGAAGTACCATGTGAGACTGACCAACTCACTCA
TGTTTATACTTTCATCCTCCGTCCAGATGCTACTTACAGCATCCTCATTG
ACAATGTGGAGAAACAATCTGGTAGCTTGTACTCTGATTGGGATCTCCTC
CCTCCAAGACCATNCAGGA
back to top