FC920360

Overview
NameFC920360
Unique NameFC920360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10332 contig Ccv1_Contig10332:2..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX1_ARATH (Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.003e-23
Identity = 70/190 (36.84%), Postives = 99/190 (52.11%), Query Frame = 3
Query:  114 ERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSN-KDKTLVFQFSVKHEQKLDCGGGYMKLLSGEV---DQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNK------LIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLP 653
            E FDE ++ RW+ S   K+ +  G W +   + +    D G+  SE  R Y I  E  E  N K+ T+V Q+ V+ ++ L+CGG Y+K L  +      + F  ++PYSIMFGPD CG  T KVH IL +            +K       D+L+HVYT IL+PD    IL+D  EK+  +L S  D  P
Sbjct:   33 ESFDEPFDGRWIVS---KNSDYEGVWKHAKSEGH---EDYGLLVSEKARKYGIVKELDEPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFGPDKCG-GTNKVHFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANLLSGEDFEP 215          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CLGN_MOUSE (Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.690e-23
Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS--GEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP 656
            V+F E FD G  + WV S  KKD+  +      G W     K N  P D+G+      + +AI+A   + F   DK L+ Q+ V  +  +DCGG Y+KLL+  G++  + F   T Y+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT ++ PD T+ +LID      G+L    D++PP
Sbjct:   60 VYFTETFDSGNLAGWVLSKAKKDDMDSEIAIYDGRWEIEELKENQVPGDRGLVLKSKAKHHAIAAVLEKPFIFADKPLIVQYEVNFQDGIDCGGAYIKLLADTGDLILENFYDKTSYTIMFGPDKCG-EDYKLHLIFRHKHPKTGVFEEKHAKPPDVDLKEFFTDRKTHLYTLVMNPDDTFEVLIDQKVVNQGTLLD--DVVPP 260          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CLGN_HUMAN (Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22
Identity = 70/204 (34.31%), Postives = 99/204 (48.53%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQ--KKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP 656
            V+F E FD G  + WV S  KKD+         G W     K N  P D+G+      + +AISA   + F   DK L+ Q+ V  +  +DCGG Y+KLL+   D   + F   T Y IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT ++ PD T+ +L+D      GSL    D++PP
Sbjct:   60 VYFAETFDSGRLAGWVLSKAKKDDMDEEISIYDGRWEIEELKENQVPGDRGLVLKSRAKHHAISAVLAKPFIFADKPLIVQYEVNFQDGIDCGGAYIKLLADTDDLILENFYDKTSYIIMFGPDKCG-EDYKLHFIFRHKHPKTGVFEEKHAKPPDVDLKKFFTDRKTHLYTLVMNPDDTFEVLVDQTVVNKGSLLE--DVVPP 260          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22
Identity = 72/192 (37.50%), Postives = 104/192 (54.17%), Query Frame = 3
Query:  108 FEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVD---QKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNG--TNKLIKKEVP----CETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLP 653
            F E FDE +++RW+ S  K++ N  G W ++  + +   +D G+  SE  R YAI  E     S KD T+V QF  + +  L+CGG Y+K L  +      K F  ++ YSIMFGPD CG +T KVH I  +    T K ++  +       +D+L+HVYT +L+ D   SILID  EK+  +  S  D  P
Sbjct:   41 FYESFDEDFDNRWIVSG-KEEYN--GVWKHSKSEGH---DDFGLLVSEPARKYAIVKELDAPVSLKDGTVVLQFETRLQNGLECGGAYIKYLQTQESGWKPKGFDNESGYSIMFGPDRCG-ATNKVHFIFRHKNPKTGKHVEHHLKFPPSVPSDKLSHVYTAVLKDDNEVSILIDGEEKKKANFLSSEDFEP 225          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 69/194 (35.57%), Postives = 100/194 (51.55%), Query Frame = 3
Query:  114 ERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFP---EFSNKDKTLVFQFSVKHEQKLDCGGGYMKLL----SGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNK------LIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP 656
            E FDE ++ RWV S+  + +   G W +   + +   +D G+  SE  + Y I  E       +  + T+V Q+  + ++ L+CGG Y+K L    +G V Q  F  D+PYSIMFGPD CG +T KVH IL +            +K       D L+HVYT +L+ D    IL+D  EK+ G+L S  D  PP
Sbjct:   33 ESFDEPFDGRWVVSEKAEYQ---GVWKHEKSEGH---DDYGLLVSEKAKKYGIVKELDVDEPLNLNEGTVVLQYEARFQEGLECGGAYLKYLRPQEAGWVPQG-FDNDSPYSIMFGPDKCG-ATNKVHFILKHKNPKSGEFVEHHLKFPPSVPFDMLSHVYTAVLKSDNEVRILVDGEEKKKGNLLSAEDFEPP 218          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX_SCHPO (Calnexin homolog OS=Schizosaccharomyces pombe GN=cal1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19
Identity = 64/197 (32.49%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  114 ERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN--------DKGIQTSEDYRFYAISAEFPEFSNK-DKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNG--TNKLIKKEVPCETDQL-----THVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP 656
            E+F   W  RW+ S  K+  N   E +Y  G+W  + +        + G+   ++   +AIS EF E  N+ +K LV Q+ V  E+ L+CGG Y+KLL+ E    +      Y IMFGPD CG +  +VH I  +    T +  +K +      L     T++YT I++PD T+ + I+    + GSL+  +D +PP
Sbjct:   44 EQFQGAWSERWIPSHAKRFVNGIEEMSYV-GEWTVEESSGPGALKGEAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLLA-EPTHGEMSNSIDYRIMFGPDKCGVN-DRVHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSLF--YDFIPP 235          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALX_CAEEL (Calnexin homolog OS=Caenorhabditis elegans GN=cnx-1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.997e-19
Identity = 67/193 (34.72%), Postives = 93/193 (48.19%), Query Frame = 3
Query:  144 WVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEF-PEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS--GEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTY----NGTNKLIKKEVPCE------TDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWD--LLPPR 659
            W+ S  KKD+  +      GEW+  A        D G+      R +AI+A+    F+    T V Q+ +K E+  +CGGGY+KLLS   E D   F   T Y+IMFGPD CG +T KVH I  Y    NGT        P         D  TH++T +++P   YS+ +D      G++ SD    L PP+
Sbjct:   75 WIKSLAKKDDVDSDIAKYNGEWSIGAPTKVSIEGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPK 266          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_PIG (Calreticulin (Fragment) OS=Sus scrofa GN=CALR PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.885e-17
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 3
Query:  102 VFFEERF--DEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDC 356
            ++F+E+F   +GW  RW+ S  K D    G +  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DC
Sbjct:   21 IYFKEQFLDGDGWTDRWIESKHKPD---FGRFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDC 105          
The following BLAST results are available for this feature:
BLAST of FC920360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALX1_ARATH3.003e-2336.84Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1... [more]
CLGN_MOUSE6.690e-2333.82Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1[more]
CLGN_HUMAN1.947e-2234.31Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1[more]
CALX_PEA1.947e-2237.50Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]
CALX2_ARATH2.811e-2135.57Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX_SCHPO2.631e-1932.49Calnexin homolog OS=Schizosaccharomyces pombe GN=c... [more]
CALX_CAEEL9.997e-1934.72Calnexin homolog OS=Caenorhabditis elegans GN=cnx-... [more]
CALR_PIG1.885e-1751.14Calreticulin (Fragment) OS=Sus scrofa GN=CALR PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC32007C09EF RVDevelop1 Citrus clementina cDNA clone C32007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920360 ID=FC920360; Name=FC920360; organism=Citrus clementina; type=EST; length=669bp
GAGAGCACTTCCTCTCTCTCGCTCTAAAAATGGCGAAATTAAACCCTAGC
TTTCTCTCTCTAACTCTCCTCACTATCTTCCTGACAATTGCCTCTGCTCA
CGTCTTCTTCGAAGAACGCTTTGACGAGGGATGGGAAAGCCGGTGGGTTA
CATCTGATTGGAAGAAAGATGAGAACACGGCTGGAGAATGGAACTACACT
GCTGGGAAATGGAATGGGGACCCGAATGATAAAGGTATTCAAACTAGTGA
AGACTACAGGTTCTATGCTATTTCAGCTGAATTCCCTGAATTCAGCAACA
AGGACAAGACACTCGTGTTCCAGTTTTCTGTTAAGCACGAACAGAAGCTT
GACTGTGGTGGTGGCTACATGAAGTTGCTTAGTGGCGAAGTTGATCAGAA
GAAATTTGGTGGTGATACCCCTTACAGTATCATGTTTGGACCAGATATCT
GTGGTTATAGCACTAAGAAAGTGCATGCCATTCTTACCTACAATGGAACA
AACAAATTGATCAAGAAGGAAGTACCATGTGAGACTGACCAACTCACTCA
TGTTTATACTTTCATCCTCCGTCCAGATGCTACTTACAGCATCCTCATTG
ACAATGTGGAGAAACAATCTGGTAGCTTGTACTCTGATTGGGATCTCCTC
CCTCCAAGACCATNCAGGA
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