FC920361

Overview
NameFC920361
Unique NameFC920361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:  331 DSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC*VGRMAGQFAKPRSDP 669
            ++W+   A Q PEYP+ E L +V+  L+ +PP+VFAG              G+AFLLQGGDCAE+F   +A++IR+  + LLQM  VL +   +PV  VGR+AGQ++KPRS P
Sbjct:   13 NTWRDLPAAQQPEYPDTEALRAVIADLESYPPLVFAGECDQLRARMAAVAKGEAFLLQGGDCAEAFDAVSADHIRNKLKTLLQMGAVLTYAASVPVVKVGRIAGQYSKPRSKP 125
[Close]
BLAST of FC920361 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 55/116 (47.41%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:  322 WTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXIGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMDVVLMFGGQMPVC*VGRMAGQFAKPRSDP 669
            W  DSW+SK   Q PEYP+K  LE     L   PPIV                 GKAFLLQGGDCAE F     + I    ++LLQM +VL++G   PV  +GRMAGQ+AKPRS P
Sbjct:   12 WAPDSWRSKPIKQCPEYPDKAALEKATNELKTLPPIVLPNEIIRLREHLRDVAQGKAFLLQGGDCAELFSYCQQDVIESKIKLLLQMSLVLLWGADKPVVRIGRMAGQYAKPRSSP 127
The following BLAST results are available for this feature:
BLAST of FC920361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AROF_STRCO3.958e-2346.02Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
AROF_NEUCR3.958e-2347.41Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]

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Properties
Property NameValue
Genbank descriptionC32007C11EF RVDevelop1 Citrus clementina cDNA clone C32007C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920361 ID=FC920361; Name=FC920361; organism=Citrus clementina; type=EST; length=670bp
GAGGTTCCTCTTTCACGATAAAGCGTTAAAGAGCCTCCGTTTATTTGAAA
AAAAAAAGGGAAAAAAGAAATTCGTTTCATTTACATTTCAACAAAAATAA
ATTAGAACATTATGGCTCTCGTTGGCAGTACTTCAATTACTCCCACAAAA
TCATCCTTCGTTCAGCCACAATCTCAGCCGTTCATCACCAAACCCAGATC
AAATATCCATCCCATCTCCGCCGTCCATGCTGCTGACTCTGCCAAGCCAC
CGTCTGCCGTAAAAACCACAACAAAGGCACCCGAGCCAGTCCTCAAGACC
AGCAATGTGGGTCCCCAAAAATGGACGGTTGACAGCTGGAAATCCAAGAA
GGCTTTGCAGCTGCCGGAGTATCCAAACAAAGAGGAGCTCGAGTCCGTGC
TGAAAACGCTCGACGATTTCCCGCCGATTGTGTTCGCCGGTGAAGCCAGG
AGCTTGGAGGAGCGGCTAGCTGAAGCCGCCATAGGCAAAGCTTTCTTGCT
TCAAGGCGGTGATTGCGCTGAGAGTTTCAAAGAGTTTAATGCTAATAACA
TTCGTGACACTTTCAGAATCCTTCTCCAGATGGATGTTGTGCTAATGTTC
GGCGGTCAAATGCCCGTTTGTTAGGTGGGAAGAATGGCAGGGCAGTTTGC
GAAGCCGAGATCAGATCCGT
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