FC920364

Overview
NameFC920364
Unique NameFC920364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:468..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.884e-90
Identity = 163/220 (74.09%), Postives = 183/220 (83.18%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQ 661
            TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG  IY GPLGH S  LI YFE + GV KIK+ YNPATWMLEV  ++ E+ LGI+FAEVY +S L+QRNK LI ELSTPPPGS+DL+FPT++SQPF TQ  AC WKQ+ SYWRNP Y A R   T VIA+ FG I+ + G+K +K+
Sbjct: 1000 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGTIFLNLGKKINKR 1219          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.461e-90
Identity = 157/216 (72.69%), Postives = 180/216 (83.33%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQK 649
            TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELLLLKRGG+VIY+GPLG  SHK++EYFEA+PGVPKI+E  NPATWML+V + + E +L IDFAE Y  S++HQR K L+KELS PPPGS DLYFP++YSQ    QF+ C WKQ+W+YWR+P YN +R    L  A+  G I+W  G K
Sbjct: 1062 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGTNSHKVVEYFEAIPGVPKIEENRNPATWMLDVSSAASEVRLEIDFAEYYRSSTMHQRTKALVKELSNPPPGSDDLYFPSQYSQSTFNQFKLCLWKQWWTYWRSPDYNLVRIFFALFTALMLGTIFWRVGHK 1277          

HSP 2 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 51/161 (31.68%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQ---------RNKELIKELSTP 460
            Q+KRLT A  LV    ++FMDE ++GLD+     ++R ++  V  G  TV+ ++ QP+ +IFE FD+++LL   G+++Y GP  H    ++E+FE      +  E    A ++ EV +   + Q  I   + Y   S+ +           K L K+LS P
Sbjct:  370 QKKRLTTAEMLVGPTKVLFMDEISTGLDSSTTFQIIRCIQQIVHMGEATVLVSLLQPAPEIFELFDDVMLLSE-GQIVYQGPREH----VLEFFERCGF--RCPERKGVADFLQEVTSKKDQEQYWIQSEKPYRYVSVPEFVAKFKKFHMGKSLKKQLSVP 523          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.461e-90
Identity = 159/227 (70.04%), Postives = 185/227 (81.50%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQICRIFL 682
            TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG+VIY+G LG  S K+IEYFEA+PGVPKIK+ YNPATWMLEV +++ E +L +DFAE Y  S L+++NK L+ +LS P PG+SDL+FPTKYSQ  + QFRAC WKQ+ +YWR+P YN +RF  TL  A+  G I+W  G K       R+ +
Sbjct: 1053 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGQLGRNSQKMIEYFEAIPGVPKIKDKYNPATWMLEVSSVAAEVRLNMDFAEYYKTSDLYKQNKVLVNQLSQPEPGTSDLHFPTKYSQSTIGQFRACLWKQWLTYWRSPDYNLVRFSFTLFTALLLGTIFWKIGTKMGNANSLRMVI 1279          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 4.198e-90
Identity = 162/218 (74.31%), Postives = 182/218 (83.49%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTS 655
            TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG  IY GPLG +S  LI+YFE++ GV KIKE YNPATWMLEV  IS E  LG++FAEVY +S L++RNK+LIKELSTPPPGS DL+F T++SQ F+ Q  AC WKQ+ SYWRNP Y A R   T+VIA+ FG I+WD G+K S
Sbjct:  997 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFWDLGKKRS 1214          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 7.161e-90
Identity = 163/221 (73.76%), Postives = 178/221 (80.54%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ 664
            TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG+ IY GPLG  S  LI+YFE+ PGV KIKE YNPATWMLEV   + E  LGIDF EVY +S L++RNK LI EL  P PGS DL+F T+YSQ F TQ  AC WKQ+WSYWRNP Y A+RF  T  IA+ FG ++WD G K SK Q
Sbjct:  991 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQ 1211          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.221e-89
Identity = 154/218 (70.64%), Postives = 181/218 (83.03%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTS 655
            TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL+L+KRGG+VIYAGPLG  SHK++EYFE+ PGV KI E YNPATWMLE  +++ E +L +DFAE+Y  S+LHQRNK L+KELS PP G+SDLYF T++SQ    QF++C WKQ+W+YWR+P YN +RF  TL  ++  G ++W  G   S
Sbjct: 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFWQIGGNRS 1238          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.221e-89
Identity = 155/221 (70.14%), Postives = 183/221 (82.81%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ 664
            TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG VIY+GPLG  SHK++EYFE+ PGVPKI E YNPATWMLE  +++ E +LG+DFAE+Y  S+L QRNK L++ELS PP G++DLYF T++SQ    QF++C WKQ+W+YWR+P YN +RF  TL  ++  G ++W  G K S  Q
Sbjct:  994 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQ 1214          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 1.764e-88
Identity = 160/215 (74.42%), Postives = 183/215 (85.12%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQ 646
            TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFE+FDELLLLKRGGRVIYAG LG  S  L+EYFEA+PGVPKI E YNPATWMLEV +   E +L IDFAEVYA+S+L++ N+ELIK+LS PPPG  DL FPTKYSQ FL Q  A  WKQ+ SYW++P YNA+R+ MTL+  + FG ++W +G+
Sbjct: 1006 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFESFDELLLLKRGGRVIYAGQLGLHSQILVEYFEAIPGVPKITEGYNPATWMLEVSSSLAEARLDIDFAEVYANSALYRSNQELIKQLSVPPPGFQDLSFPTKYSQNFLNQCVANTWKQFQSYWKDPPYNAMRYVMTLLYGLVFGTVFWRRGK 1220          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 3.929e-88
Identity = 157/221 (71.04%), Postives = 179/221 (81.00%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ 664
            TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG+ IY GPLG +S  LI+YFE++PGV KI E YNPATWMLEV   S E  LG+DF ++Y  S L++RNK LI ELS P PG+SDL+F +++SQPF TQ  AC WKQ+WSYWRNP Y A+R   T  IA+ FG ++WD G K S+ Q
Sbjct:  992 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALIDELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQ 1212          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.066e-85
Identity = 149/221 (67.42%), Postives = 179/221 (81.00%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ 664
            TEQRKR+TIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL LL RGG  IY GP+GH S +LIEYFE + GV KIKE YNPATW LEV   + E+ LG+ FA+VY  S+L++RNK+LIKEL+  PP + D++F TKYSQ +L+QF+AC WKQ+ SYWRN  YNA+RF     + I +G+I+W  G++   +Q
Sbjct:  975 TEQRKRMTIAVELVANPSILFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLLTRGGEEIYVGPIGHHSSQLIEYFEGIRGVGKIKEGYNPATWALEVTTRAQEDVLGVTFAQVYKKSNLYRRNKDLIKELNNIPPHAQDIHFSTKYSQSYLSQFQACLWKQHKSYWRNVPYNAVRFSFGAAVGIMYGIIFWSLGKRKGTRQ 1195          
The following BLAST results are available for this feature:
BLAST of FC920364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PDR7_ORYSJ1.884e-9074.09Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR15_ORYSJ2.461e-9072.69Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
PDR12_ORYSJ2.461e-9070.04Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
TUR2_SPIPO4.198e-9074.31Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR1_TOBAC7.161e-9073.76Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB36G_ARATH1.221e-8970.64ABC transporter G family member 36 OS=Arabidopsis ... [more]
AB35G_ARATH1.221e-8970.14ABC transporter G family member 35 OS=Arabidopsis ... [more]
PDR5_ORYSJ1.764e-8874.42Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
PDR1_NICPL3.929e-8871.04Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB38G_ARATH4.066e-8567.42ABC transporter G family member 38 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32007D03EF RVDevelop1 Citrus clementina cDNA clone C32007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920364 ID=FC920364; Name=FC920364; organism=Citrus clementina; type=EST; length=710bp
GACAGAGCAAAGGAAGAGATTGACGATTGCTGTAGAATTGGTTGCTAACC
CTTCTATCATCTTCATGGATGAGCCTACATCTGGGCTTGATGCTAGAGCT
GCTGCTATTGTCATGCGTACTGTTAGAAATACAGTGGATACAGGGAGAAC
AGTTGTGTGTACAATCCACCAGCCAAGCATAGACATTTTTGAAGCATTTG
ACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCGTCATTTATGCTGGACCT
CTTGGTCACGAATCTCACAAGCTCATAGAGTATTTTGAGGCTGTTCCAGG
GGTTCCTAAAATTAAGGAAGCATACAATCCTGCAACATGGATGCTGGAGG
TCGGTAACATTTCAGTTGAGAATCAACTGGGAATTGATTTTGCTGAAGTT
TATGCCGATTCATCGCTTCATCAGAGGAATAAGGAACTTATCAAAGAGCT
TAGTACTCCACCACCTGGCTCGTCAGATCTCTACTTCCCAACCAAATACT
CTCAACCATTTTTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGG
TCTTATTGGAGAAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCT
TGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGA
CTTCCAAACAACAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTT
GTATTTTCCT
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