FC920364

Overview
NameFC920364
Unique NameFC920364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCGO_DICDI (ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 36/77 (46.75%), Postives = 58/77 (75.32%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR----NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 226
            +R+RL+IA EL+ +PSI+F+DEPTSGLD+ +A+ ++  ++    N+    RT++ +IHQPS ++FE FD L+LL +G
Sbjct:  607 ERRRLSIATELIVDPSILFIDEPTSGLDSHSASELITKLKQLANNSTKGQRTIIFSIHQPSAELFEQFDNLILLHQG 683          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG8_HUMAN (ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNI 361
            +R+R++I V+L+ NP I+ +DEPTSGLD+  A  +++T+       R V+ ++HQP  DIF  FD L+LL   G  IY G   H    +++YF A+ G P  + + NPA + +++ +I
Sbjct:  217 ERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVKTLSRLAKGNRLVLISLHQPRSDIFRLFD-LVLLMTSGTPIYLGAAQH----MVQYFTAI-GYPCPRYS-NPADFYVDLTSI 327          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: WHITE_ANOAL (Protein white OS=Anopheles albimanus GN=W PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 58/229 (25.33%), Postives = 108/229 (47.16%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNI--SVENQLGIDFAEVYADSSLHQRNKELIKELS----------TPPPGSSDLYF--------PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 634
            +RKR     E + +P ++  DEPTS LD+  A  V++ ++     G+T++ TIHQPS +++  FD +LL+  G  V + G      ++  ++F  + G+P     YNPA + +++  I  + E +      ++    ++    +++I+  S          T    ++D YF         T Y   + TQF    W+ + S  ++P    +R   T ++A   G IY+
Sbjct:  252 ERKRTAFRSETLTDPHLLLCDEPTSSLDSFMAQSVLQVLKGMAMKGKTIILTIHQPSSELYCLFDRILLVAEG--VAFLG----SPYQSADFFSQL-GIP-CPPNYNPADFYVQMLAIAPNKETECRETIKKICDSFAVSPIARDIIETASQVNGDGGIELTRTKHTTDPYFLQPMEGVDSTGYRASWWTQFYCILWRSWLSVLKDPMLVKVRLLQTAMVASLIGSIYF 472          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG8_RAT (ATP-binding cassette sub-family G member 8 OS=Rattus norvegicus GN=Abcg8 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNI 361
            +R+R++I V+L+ NP I+ +DEPTSGLD+  A  ++RT+       R V+ ++HQP  DIF  FD L+LL   G  IY G   H    +++YF ++ G P  + + NPA + +++ +I
Sbjct:  239 ERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVRTLSRLAKGNRLVLISLHQPRSDIFRLFD-LVLLMTSGTPIYLGVAQH----MVQYFTSI-GYPCPRYS-NPADFYVDLTSI 349          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 63/244 (25.82%), Postives = 109/244 (44.67%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGN------ISVENQLGIDFA---EVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLT----QFRACFWKQY-------WSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQICRIF 679
            +RKR++I  E++ NPS++F+DEPTSGLD+  A  ++  +      GRTVV TIHQPS                G  +Y G LG  +   ++YF +V G   + E  NP+ ++L++ N      IS    +G D +   E    + +      L+  +     G  DL    + S    T     +   +W+Q+           R+  ++ ++     +++   GL++W       + QI  +F
Sbjct:  196 ERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARGGRTVVTTIHQPS---------------KGNPVYFG-LGSNA---MDYFASV-GYSPLVERINPSDFLLDIANGKPLLVISCWPSVGSDESQRPEAMKAALVAFYKTNLLDSVINEVKGQDDLCNKPRESSRVATNTYGDWPTTWWQQFCVLLKRGLKQRRHDSFSGMKVAQIFIVSFLCGLLWWQTKISRLQDQIGLLF 419          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB18G_ARATH (ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 61/230 (26.52%), Postives = 108/230 (46.96%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEV-----GNISVENQLGIDFAEVYADSSLHQRN-------KELIK------ELSTPPPGSSDLYFPT--KYSQPFLTQFRACFWKQYWSYW-RNPQYNAIRFGMTLVIAIFFGLIYW 634
            +R+R++I ++++ +P ++F+DEPTSGLD+  A +V++ ++    +G  V+ +IHQPS  I    D L++L  G  V    P+      L  +F +  G P I E  N   + L+V     G+      L ++F E +  +   +         KE I       +L +   G++ +   T   Y+ P L +      K+Y   W R P+   +R G  +V  +    +YW
Sbjct:  221 ERRRVSIGIDIIHDPILLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSVVIMSIHQPSARIIGLLDRLIILSHGKSVFNGSPV-----SLPSFFSSF-GRP-IPEKENITEFALDVIRELEGSSEGTRDL-VEFNEKWQQNQTARATTQSRVSLKEAIAASVSRGKLVSGSSGANPISMETVSSYANPPLAE-TFILAKRYIKNWIRTPELIGMRIGTVMVTGLLLATVYW 441          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ADP1_YEAST (Probable ATP-dependent permease OS=Saccharomyces cerevisiae GN=ADP1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 38/81 (46.91%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 247
            +++R++IA ELV +P ++F+DEPTSGLDA  A  ++   VR + D  RT+V +IHQP  +IF  FD+L+LL + G ++Y+G
Sbjct:  534 EKRRVSIACELVTSPLVLFLDEPTSGLDASNANNVIECLVRLSSDYNRTLVLSIHQPRSNIFYLFDKLVLLSK-GEMVYSG 613          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB19G_ARATH (ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 60/236 (25.42%), Postives = 100/236 (42.37%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADS------SLHQRNK--------------------ELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYW-RNPQYNAIRFGMTLVIAIFFGLIYW 634
            +R+R++I ++++ +P ++F+DEPTSGLD+  A +V++ ++    +G  V+ +IHQPS  I E  D L++L RG  V    P         ++   +P    I E        LE  N   +    +DF E +  +      S  Q NK                    +L+   S   P S +    + Y+ P L +      K+Y   W R P+    R    +V       +YW
Sbjct:  229 ERRRVSIGIDIIHDPIVLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSIVIMSIHQPSARIVELLDRLIILSRGKSVFNGSPASLPGF-FSDFGRPIPEKENISEFALDLVRELEGSNEGTKAL--VDFNEKWQQNKISLIQSAPQTNKLDQDRSLSLKEAINASVSRGKLVSGSSRSNPTSMETV--SSYANPSLFE-TFILAKRYMKNWIRMPELVGTRIATVMVTGCLLATVYW 458          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG8_MOUSE (ATP-binding cassette sub-family G member 8 OS=Mus musculus GN=Abcg8 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 43/118 (36.44%), Postives = 73/118 (61.86%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNI 361
            +R+R++I V+L+ NP I+ +DEPTSGLD+  A  ++ T+       R V+ ++HQP  DIF  FD L+LL   G  IY G     + ++++YF ++ G P  + + NPA + +++ +I
Sbjct:  218 ERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVTTLSRLAKGNRLVLISLHQPRSDIFRLFD-LVLLMTSGTPIYLG----AAQQMVQYFTSI-GHPCPRYS-NPADFYVDLTSI 328          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB16G_ARATH (ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 28/81 (34.57%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 250
            +R+R++I ++++ +P ++F+DEPTSGLD+ +A +V++ ++   ++G  ++ +IHQPS  +    D L+ L RG  V    P
Sbjct:  236 ERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLKRIAESGSIIIMSIHQPSHRVLSLLDRLIFLSRGHTVFSGSP 316          
The following BLAST results are available for this feature:
BLAST of FC920364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ABCGO_DICDI8.366e-1446.75ABC transporter G family member 24 OS=Dictyosteliu... [more]
ABCG8_HUMAN1.093e-1338.14ATP-binding cassette sub-family G member 8 OS=Homo... [more]
WHITE_ANOAL1.427e-1325.33Protein white OS=Anopheles albimanus GN=W PE=3 SV=... [more]
ABCG8_RAT1.427e-1338.14ATP-binding cassette sub-family G member 8 OS=Ratt... [more]
AB9G_ARATH7.082e-1325.82ABC transporter G family member 9 OS=Arabidopsis t... [more]
AB18G_ARATH7.082e-1326.52ABC transporter G family member 18 OS=Arabidopsis ... [more]
ADP1_YEAST9.250e-1346.91Probable ATP-dependent permease OS=Saccharomyces c... [more]
AB19G_ARATH9.250e-1325.42ABC transporter G family member 19 OS=Arabidopsis ... [more]
ABCG8_MOUSE2.061e-1236.44ATP-binding cassette sub-family G member 8 OS=Mus ... [more]
AB16G_ARATH4.591e-1234.57ABC transporter G family member 16 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32007D03EF RVDevelop1 Citrus clementina cDNA clone C32007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920364 ID=FC920364; Name=FC920364; organism=Citrus clementina; type=EST; length=710bp
GACAGAGCAAAGGAAGAGATTGACGATTGCTGTAGAATTGGTTGCTAACC
CTTCTATCATCTTCATGGATGAGCCTACATCTGGGCTTGATGCTAGAGCT
GCTGCTATTGTCATGCGTACTGTTAGAAATACAGTGGATACAGGGAGAAC
AGTTGTGTGTACAATCCACCAGCCAAGCATAGACATTTTTGAAGCATTTG
ACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCGTCATTTATGCTGGACCT
CTTGGTCACGAATCTCACAAGCTCATAGAGTATTTTGAGGCTGTTCCAGG
GGTTCCTAAAATTAAGGAAGCATACAATCCTGCAACATGGATGCTGGAGG
TCGGTAACATTTCAGTTGAGAATCAACTGGGAATTGATTTTGCTGAAGTT
TATGCCGATTCATCGCTTCATCAGAGGAATAAGGAACTTATCAAAGAGCT
TAGTACTCCACCACCTGGCTCGTCAGATCTCTACTTCCCAACCAAATACT
CTCAACCATTTTTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGG
TCTTATTGGAGAAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCT
TGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGA
CTTCCAAACAACAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTT
GTATTTTCCT
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