FC920364

Overview
NameFC920364
Unique NameFC920364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:468..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB10G_ARATH (ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 34/74 (45.95%), Postives = 53/74 (71.62%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 226
            +R+R++I VELV +P++I +DEPTSGLD+ +A  V+  +++ T+  G+T+V TIHQP   I E  D ++LL  G
Sbjct:  177 ERRRVSIGVELVHDPNVILIDEPTSGLDSASALQVVTLLKDMTIKQGKTIVLTIHQPGFRILEQIDRIVLLSNG 250          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB2G_ARATH (ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 33/97 (34.02%), Postives = 60/97 (61.86%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVP 298
            +R+R++I  +++ +P I+F+DEPTSGLD+ +A +V++ ++    +G  V+ +IHQPS  I    D+L+ L + G  +Y+G   H      E+   +P
Sbjct:  262 ERRRVSIGNDIIHDPIILFLDEPTSGLDSTSAYMVIKVLQRIAQSGSIVIMSIHQPSYRIMGLLDQLIFLSK-GNTVYSGSPTHLPQFFSEFKHPIP 357          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB23G_ARATH (ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEV 352
            +RKR++IAVE++ +P I+ +DEPTSGLD+R +  V+  +     +  RTV+ +IHQPS  I +   + L+L RG  VI+ G L H    + +    +P      E  NP  + +E+
Sbjct:  199 ERKRVSIAVEMIRDPPILLLDEPTSGLDSRNSLQVVELLATMAKSKQRTVLFSIHQPSYRILDYISDYLILSRGS-VIHLGSLEHLEDSIAKLGFQIP------EQLNPIEFAMEI 307          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB5G_ARATH (ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 30/74 (40.54%), Postives = 54/74 (72.97%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 226
            +R+R++I VE++ +P ++ +DEPTSGLD+ +A +++  +++  +T GRT++ TIHQP   I + F+ +LLL  G
Sbjct:  187 ERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDMLKHMAETRGRTIILTIHQPGFRIVKQFNSVLLLANG 260          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB1G_ARATH (ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 31/97 (31.96%), Postives = 59/97 (60.82%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVP 298
            +R+R++I ++++ +P ++F+DEPTSGLD+ +A +V++ ++    +G  V+ +IHQPS  +    D L+ L R G  +Y+G          E+   +P
Sbjct:  238 ERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQSGSIVIMSIHQPSHRVLGLLDRLIFLSR-GHTVYSGSPASLPRFFTEFGSPIP 333          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB8G_ARATH (ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 49/152 (32.24%), Postives = 79/152 (51.97%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH-ESHKLIEYFEAVPGVPKIKEAYNPATWMLEV-GNISVENQLGIDFAEVYADSSLHQRNKELIKELS 454
            +R+R++I + L+ +P  + +DEPTSGLD+++A  V+  +++  V   RTV+ +IHQPS  I    D LLLL + G V+Y G L   E   L + F   P +  ++ A      + E  GN        I+  +     S+ +  K  I E+S
Sbjct:  164 ERRRVSIGLSLLHDPCFLLLDEPTSGLDSKSAFDVIHILKSIAVSRQRTVILSIHQPSFKILSIIDRLLLLSK-GTVVYHGRLDSLEGFLLFKGFTVPPQLNSLEYAMEILQELRESDGNTDATALPSIENRKQREKQSIVRYRKSRITEIS 314          
The following BLAST results are available for this feature:
BLAST of FC920364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
AB10G_ARATH4.591e-1245.95ABC transporter G family member 10 OS=Arabidopsis ... [more]
AB2G_ARATH5.996e-1234.02ABC transporter G family member 2 OS=Arabidopsis t... [more]
AB23G_ARATH7.830e-1236.21ABC transporter G family member 23 OS=Arabidopsis ... [more]
AB5G_ARATH1.336e-1140.54ABC transporter G family member 5 OS=Arabidopsis t... [more]
AB1G_ARATH1.336e-1131.96ABC transporter G family member 1 OS=Arabidopsis t... [more]
AB8G_ARATH5.076e-1132.24ABC transporter G family member 8 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC32007D03EF RVDevelop1 Citrus clementina cDNA clone C32007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920364 ID=FC920364; Name=FC920364; organism=Citrus clementina; type=EST; length=710bp
GACAGAGCAAAGGAAGAGATTGACGATTGCTGTAGAATTGGTTGCTAACC
CTTCTATCATCTTCATGGATGAGCCTACATCTGGGCTTGATGCTAGAGCT
GCTGCTATTGTCATGCGTACTGTTAGAAATACAGTGGATACAGGGAGAAC
AGTTGTGTGTACAATCCACCAGCCAAGCATAGACATTTTTGAAGCATTTG
ACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCGTCATTTATGCTGGACCT
CTTGGTCACGAATCTCACAAGCTCATAGAGTATTTTGAGGCTGTTCCAGG
GGTTCCTAAAATTAAGGAAGCATACAATCCTGCAACATGGATGCTGGAGG
TCGGTAACATTTCAGTTGAGAATCAACTGGGAATTGATTTTGCTGAAGTT
TATGCCGATTCATCGCTTCATCAGAGGAATAAGGAACTTATCAAAGAGCT
TAGTACTCCACCACCTGGCTCGTCAGATCTCTACTTCCCAACCAAATACT
CTCAACCATTTTTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGG
TCTTATTGGAGAAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCT
TGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGA
CTTCCAAACAACAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTT
GTATTTTCCT
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