FC920364

Overview
NameFC920364
Unique NameFC920364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:468..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 9.059e-85
Identity = 150/221 (67.87%), Postives = 178/221 (80.54%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ 664
            TEQRKRLTIAVELVANPSIIFMDEPT+GLDAR+AAIVMR V+N  DTGRT+VCTIHQPSIDIFEAFDEL+LLK GGR+IY G LG  S K+IEYFE +  VPKIK  +NPATWMLEV + S E  + IDFAEVY +S+LH+ N+EL+K+LS PP GS DL+FPT++SQ    QF+ CFWKQYWSYWR+P YN +R    L  ++  GL++WDKG+K   QQ
Sbjct: 1001 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARSAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELILLKTGGRMIYWGHLGRNSCKMIEYFEGISCVPKIKNNHNPATWMLEVTSTSSEADISIDFAEVYKNSALHKNNEELVKKLSFPPAGSKDLHFPTRFSQNGWGQFKTCFWKQYWSYWRSPSYNLMRSLHMLFASLVSGLLFWDKGKKLDNQQ 1221          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.208e-82
Identity = 144/221 (65.16%), Postives = 178/221 (80.54%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ 664
            TEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N  DTGRT+VCTIHQPSIDIFEAFDEL+LLKRGGR+IY GPLG  S  +IEYFE+VP +PKIK+ +NPATWML+V + SVE +LG+DFA++Y DS+L++RN EL+K+LS P  GSSD+ F   ++Q +  QF++  WK   SYWR+P YN +R   TLV ++ FG ++W +GQ    QQ
Sbjct: 1004 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQ 1224          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 9.374e-82
Identity = 148/221 (66.97%), Postives = 178/221 (80.54%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ 664
            TEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDELL +KRGG +IYAGPLG +S +LI+YFE++ GV KIK  +NPA WML+V   + E++LG+DFAE+Y +S+L QRNKELI+ LS P   + ++ FPT+YSQ   +QF AC WKQ  SYWRNPQY A+RF  T+VI++  G I W  G K   QQ
Sbjct:  972 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQ 1192          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.088e-81
Identity = 141/221 (63.80%), Postives = 178/221 (80.54%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ 664
            TEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR V+N  +TGRT+VCTIHQPSI IFEAFDEL+LLKRGGR+IY+GPLG  S  +IEYF+ +PGV KI++ YNPATWMLEV + SVE +L +DFA++Y +S L++ N EL+KELS P  GSSDL+F   ++Q +  QF++C WK   SYWR+P YN +R G T + +  FGL++W++G+K   QQ
Sbjct:  967 TEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQ 1187          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 3.334e-79
Identity = 146/244 (59.84%), Postives = 175/244 (71.72%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQ------------------------RNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQ 661
            TEQRKRLTIAVELVANPSI+FMDEPTSGLDAR+AAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDELL +KRGG++IYAGPLG +S  L+E+FEA+PGVPKI++ YNPA WMLEV +  +E  LG+DFAE Y  S L Q                        + +E++  LS P   S +L F TKYSQPF  Q+ AC WKQ  SYWRNPQY A+RF  T++I++ FG I W  G +   Q
Sbjct:  978 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGQLIYAGPLGSKSRNLVEFFEAIPGVPKIRDGYNPAAWMLEVTSTQMEQILGVDFAEYYRQSKLFQTQRPFSPLILVSFSLNMFMLWHSRQTQEMVDILSRPRRESKELTFATKYSQPFFAQYAACLWKQNLSYWRNPQYTAVRFFYTVIISLMFGTICWKFGSRRETQ 1221          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 4.682e-76
Identity = 138/221 (62.44%), Postives = 165/221 (74.66%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ 664
            TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG+VIY G LG  S  L++YF+ + GVP I   YNPATWMLEV   ++E +  ++FA++Y  S   +  +  IK+LS PP GS  + F ++YSQ  L+QF  C WKQ   YWR+P+YN +R   T + A   G ++WD G K +  Q
Sbjct:  980 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKRTSSQ 1200          

HSP 2 Score: 22.7126 bits (47), Expect = 4.682e-76
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  664 DLQNLFGAMYSICIF 708
            DL  + GA+YS C+F
Sbjct: 1201 DLITVMGALYSACLF 1215          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.815e-75
Identity = 134/237 (56.54%), Postives = 181/237 (76.37%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ-ICRIFLELCILFVFS 709
            TEQRKRLTIAVELV+NPSIIF+DEPT+GLDARAAAIVMR V+N  +TGRTVVCTIHQPSIDIFE FDEL+L+K GG+++Y GPLG  S K+I+YFE++PGVPK+++  NPATWML++   S E++LG+DFA+ Y DS+L++ NK ++++LS+   GS  L FP++YSQ    Q +AC WKQ+ SYWRNP +N  R    L+ ++   L++W K +  + QQ +  IF  +  + +FS
Sbjct:  951 TEQRKRLTIAVELVSNPSIIFLDEPTTGLDARAAAIVMRAVKNVAETGRTVVCTIHQPSIDIFETFDELILMKDGGQLVYYGPLGKHSSKVIKYFESIPGVPKVQKNCNPATWMLDITCKSAEHRLGMDFAQAYKDSTLYKENKMVVEQLSSASLGSEALSFPSRYSQTGWGQLKACLWKQHCSYWRNPSHNLTRIVFILLNSLLCSLLFWQKAKDINNQQDLFSIFGSMYTIVIFS 1187          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.919e-75
Identity = 145/216 (67.13%), Postives = 163/216 (75.46%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQK 649
            TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGGRVIY G LG  S  +I YF+ +P V  I E YNPATWMLEV   + E +LGIDFA VY +S   +  + LI ELS P  G+  L F +++SQ  LTQF  C  KQ   YWR+P+YN +R   T V AI FG I+W+ G K
Sbjct:  992 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGSLGVNSVDMINYFQGIPRVVPITEGYNPATWMLEVTTQASEERLGIDFATVYKNSYQFRNVENLIVELSIPASGTEPLKFSSEFSQNRLTQFMVCLRKQSLVYWRSPEYNVVRLFFTSVAAIIFGSIFWNVGMK 1207          

HSP 2 Score: 22.7126 bits (47), Expect = 3.919e-75
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  658 TTDLQNLFGAMYSICIF 708
            T D+  L GA+Y+ C+F
Sbjct: 1211 TEDILLLMGALYAACLF 1227          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 4.218e-74
Identity = 134/235 (57.02%), Postives = 178/235 (75.74%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ-ICRIFLELCILFVF 706
            EQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N  +TGRTVVCTIHQPSIDIFE FDEL+L+K GG+++Y GP G  S K+IEYFE+  G+PKI++  NPATW+L++ + S E +LGIDF++ Y DS+L+++NK ++++LS+   GS  L FP+++SQ    Q +AC WKQ++SYWRNP +N  R    L+ +   GL++W K +  + QQ +  IF  +  L VF
Sbjct:  955 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTVVCTIHQPSIDIFETFDELILMKNGGQLVYYGPPGQNSSKVIEYFESFSGLPKIQKNCNPATWILDITSKSAEEKLGIDFSQSYKDSTLYKQNKMVVEQLSSASLGSEALRFPSQFSQTAWVQLKACLWKQHYSYWRNPSHNITRIVFILLDSTLCGLLFWQKAEDINNQQDLISIFGSMYTLVVF 1189          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB42G_ARATH (ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.948e-72
Identity = 131/237 (55.27%), Postives = 174/237 (73.42%), Query Frame = 2
Query:    2 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ-ICRIFLELCILFVFS 709
            TEQRKRLTIAVELV+NPSIIFMDEPT+GLDARAAAIVMR V+N  +TGRTVVCTIHQPSIDIFEAFDEL+L+K GG++IY GPLG  S K+IEYF  + GVPK+KE  NPATW+L++ + S E++LG+D A++Y +S+L + NK +I++      GS  L   ++Y+Q    QF+AC WKQ+ SYWRNP YN  R        +  G+++W K ++ + QQ +  +F  +  + +FS
Sbjct:  946 TEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAETGRTVVCTIHQPSIDIFEAFDELILMKNGGKIIYYGPLGQHSSKVIEYFMRIHGVPKLKENSNPATWILDITSKSSEDKLGVDLAQMYEESTLFKENKMVIEQTRCTSLGSERLILSSRYAQTSWEQFKACLWKQHLSYWRNPSYNLTRIIFMSFTCMLCGILFWQKAKEINNQQDLFNVFGSMFTVVLFS 1182          
The following BLAST results are available for this feature:
BLAST of FC920364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PDR3_TOBAC9.059e-8567.87Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]
AB37G_ARATH4.208e-8265.16ABC transporter G family member 37 OS=Arabidopsis ... [more]
AB32G_ARATH9.374e-8266.97ABC transporter G family member 32 OS=Arabidopsis ... [more]
AB33G_ARATH2.088e-8163.80ABC transporter G family member 33 OS=Arabidopsis ... [more]
PDR6_ORYSJ3.334e-7959.84Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]
AB31G_ARATH4.682e-7662.44ABC transporter G family member 31 OS=Arabidopsis ... [more]
AB41G_ARATH3.815e-7556.54ABC transporter G family member 41 OS=Arabidopsis ... [more]
PDR13_ORYSJ3.919e-7567.13Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]
AB30G_ARATH4.218e-7457.02ABC transporter G family member 30 OS=Arabidopsis ... [more]
AB42G_ARATH3.948e-7255.27ABC transporter G family member 42 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32007D03EF RVDevelop1 Citrus clementina cDNA clone C32007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920364 ID=FC920364; Name=FC920364; organism=Citrus clementina; type=EST; length=710bp
GACAGAGCAAAGGAAGAGATTGACGATTGCTGTAGAATTGGTTGCTAACC
CTTCTATCATCTTCATGGATGAGCCTACATCTGGGCTTGATGCTAGAGCT
GCTGCTATTGTCATGCGTACTGTTAGAAATACAGTGGATACAGGGAGAAC
AGTTGTGTGTACAATCCACCAGCCAAGCATAGACATTTTTGAAGCATTTG
ACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCGTCATTTATGCTGGACCT
CTTGGTCACGAATCTCACAAGCTCATAGAGTATTTTGAGGCTGTTCCAGG
GGTTCCTAAAATTAAGGAAGCATACAATCCTGCAACATGGATGCTGGAGG
TCGGTAACATTTCAGTTGAGAATCAACTGGGAATTGATTTTGCTGAAGTT
TATGCCGATTCATCGCTTCATCAGAGGAATAAGGAACTTATCAAAGAGCT
TAGTACTCCACCACCTGGCTCGTCAGATCTCTACTTCCCAACCAAATACT
CTCAACCATTTTTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGG
TCTTATTGGAGAAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCT
TGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGA
CTTCCAAACAACAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTT
GTATTTTCCT
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