FC920364

Overview
NameFC920364
Unique NameFC920364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:468..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.959e-71
Identity = 130/236 (55.08%), Postives = 173/236 (73.31%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ-ICRIFLELCILFVFS 709
            EQRKRLTIAVELV+NPSIIFMDEPT+GLDARAAAIVMR V+N  +TGRTVVCTIHQPSIDIFEAFDEL+L+K GG++IY GPLG  S K+IEYF ++PGVPK+KE  NPATW+L++ + S E++LG+D A +Y +S+L + NK +I++      GS  L   ++Y+Q    QF+AC WKQ+ SYWRNP YN  R        +  G+++  K ++ + QQ +  +F  +  + +FS
Sbjct:  945 EQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAETGRTVVCTIHQPSIDIFEAFDELILMKNGGKIIYYGPLGQHSSKVIEYFMSIPGVPKLKENSNPATWILDITSKSSEDKLGVDLAHIYEESTLFKENKMVIEQTRCTSLGSERLILSSRYAQTSWEQFKACLWKQHLSYWRNPSYNLTRIIFMCFTCMLCGILFLQKAKEINNQQDLFNVFGSMFTVVLFS 1180          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCGJ_DICDI (ABC transporter G family member 19 OS=Dictyostelium discoideum GN=abcG19 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.467e-34
Identity = 84/233 (36.05%), Postives = 125/233 (53.65%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADS-SLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWD-KGQKTSKQQICRIFLELCIL 697
            E+RKRLTI VELVA P I+F+DEPTSGLDA+++  +++ +R   D G  +VCTIHQPS  +FE FD +LLL +GG+ +Y G +G  S  L  YFE   GV    E+ NPA ++LE     V  +  ++++E +  S  L +  +EL    +  P  + D   P +++ P   Q    + +    +WR+P Y    F    +  +  G  +W  KG  +   Q      E  IL
Sbjct:  964 EERKRLTIGVELVAKPHILFLDEPTSGLDAQSSYNIVKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILLLAKGGKTVYFGDIGEGSKTLTSYFERY-GVRPCTESENPAEYILEATGAGVHGKSDVNWSETWKQSPELQEIERELAALEAQGPSSTEDHGKPREFATPIWYQTIEVYKRLNIIWWRDPFYTYGSFIQASMAGLIMGFTFWSLKGSSSDMSQRVFFIFETLIL 1195          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCGH_DICDI (ABC transporter G family member 17 OS=Dictyostelium discoideum GN=abcG17-1 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.467e-34
Identity = 89/237 (37.55%), Postives = 130/237 (54.85%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPP-----GSSDLYF------PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQICRIFL 682
            E+RKRLTI VELVA P I+F+DEPTSGLDA+++  +++ +R   D G  +VCTIHQPS  +FE FD +LLL RGG+ +Y G +G +S  L  YFE   GV    E+ NPA ++LE     +  +  +++ E +  SS +Q     +  L T          SDL        P +++  FLTQF   + +    Y+R+  Y    F  + V  +  G  ++D    +S QQ  RIF+
Sbjct:  984 EERKRLTIGVELVAKPQILFLDEPTSGLDAQSSYNIIKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILLLARGGKTVYFGDIGDKSKTLTSYFER-HGVRPCTESENPAEYILEATGAGIHGKTDVNWPEAWKQSSEYQNVVNELDLLRTKEELGKYILDSDLQVDGKQAPPREFANGFLTQFIEVYKRLNIIYYRDVFYTMGSFAQSAVSGLVIGFTFYDLKNSSSDQQ-QRIFM 1218          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: CDR2_CANAL (Multidrug resistance protein CDR2 OS=Candida albicans GN=CDR2 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 87/238 (36.55%), Postives = 130/238 (54.62%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSII-FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELS---TPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQICRIFLELCILFVF 706
            EQRKRLTI VELVA P ++ F+DEPTSGLD++ A  + + +R   D G+ ++CTIHQPS  I   FD+LL L++GGR  Y G LG     +I YFE     P  KEA NPA WML+V   +  +    D+ EV+ +SS +Q  +E I  +    +  P  +D     KY+ P   Q+    W+     WR+P Y   +  + +  ++F G  ++      SK  +  +  ++  +F+F
Sbjct: 1002 EQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSALIMAEFDKLLFLQKGGRTAYFGELGENCQTMINYFEKYGADPCPKEA-NPAEWMLQVVGAAPGSHAKQDYFEVWRNSSEYQAVREEINRMEAELSKLPRDNDPEALLKYAAPLWKQYLLVSWRTIVQDWRSPGYIYSKLILVISSSLFIGFSFF-----KSKNNLQGLQSQMLAVFMF 1233          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR12_YEAST (ATP-dependent permease PDR12 OS=Saccharomyces cerevisiae GN=PDR12 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 78/213 (36.62%), Postives = 128/213 (60.09%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSII-FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPG---SSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIY 631
            EQRK+L+I VELVA PS++ F+DEPTSGLD+++A  +++ +R   D+G++++CTIHQPS  +FE FD LLLLK+GG+++Y G +G  S  L++YFE   G+ K   + NPA ++L          +  D+ +++  S      +  ++EL    PG   + D    T+++  ++TQ +    +    +WR+P Y   +F   +  A+F GL Y
Sbjct:  986 EQRKKLSIGVELVAKPSLLLFLDEPTSGLDSQSAWSIVQFMRALADSGQSILCTIHQPSATLFEQFDRLLLLKKGGKMVYFGDIGPNSETLLKYFERQSGM-KCGVSENPAEYILNCIGAGATASVNSDWHDLWLASPECAAARAEVEELHRTLPGRAVNDDPELATRFAASYMTQIKCVLRRTALQFWRSPVYIRAKFFECVACALFVGLSY 1197          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: CDR3_CANAL (Opaque-specific ABC transporter CDR3 OS=Candida albicans GN=CDR3 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 91/243 (37.45%), Postives = 128/243 (52.67%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSI-IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQ-FRACFWKQY--------WSYWRNPQYNAIRFGMTLVIAIFFGLIYW--DKGQKTSKQQICRIFLELCIL 697
            EQRKRLTIAVELVA P + +F+DEPTSGLD++ A  + + +R   + G+ ++CTIHQPS  + E FD LLLL++ G  +Y G  G   H LIEYFE   G  K  +  NPA WML V   +   Q   D+ E + +S  ++  +  +  L   P  +S         +P   Q + A FWKQY          YWR P Y   +F M ++ ++F G  Y+      +  K Q+  IF    +L
Sbjct:  985 EQRKRLTIAVELVARPKLLVFLDEPTSGLDSQTAWSICKLIRKLANHGQAILCTIHQPSAILLEEFDRLLLLQK-GETVYFGEFGANCHTLIEYFER-NGASKCPQHANPAEWMLGVIGAAPGTQANQDYFETWRNSPEYRAVQNELHRLEEMPGLASG------EKEPDTNQAYAASFWKQYIFVVHRLFQQYWRTPSYIYSKFAMAVLCSLFNGFTYYKSQNSMQGLKNQMLSIFSMFVVL 1219          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: CDR1_CANAL (Multidrug resistance protein CDR1 OS=Candida albicans GN=CDR1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 84/214 (39.25%), Postives = 119/214 (55.61%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSII-FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELS---TPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 634
            EQRKRLTI VELVA P ++ F+DEPTSGLD++ A  + + +R   D G+ ++CTIHQPS  I   FD LL L++GGR  Y G LG     +I YFE     P  KEA NPA WML+V   +  +    D+ EV+ +SS +Q  +E I  +    +  P  +D     KY+ P   Q+    W+     WR+P Y   +  + +  A+F G  ++
Sbjct: 1004 EQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSALIMAEFDRLLFLQKGGRTAYFGELGENCQTMINYFEKYGADPCPKEA-NPAEWMLQVVGAAPGSHAKQDYFEVWRNSSEYQAVREEINRMEAELSKLPRDNDPEALLKYAAPLWKQYLLVSWRTIVQDWRSPGYIYSKIFLVVSAALFNGFSFF 1216          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: CDR4_CANAL (ABC transporter CDR4 OS=Candida albicans GN=CDR4 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 86/237 (36.29%), Postives = 128/237 (54.01%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSI-IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQR---NKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW--DKGQKTSKQQICRIFLELCIL 697
            EQRKRL+I VELVA P + +F+DEPTSGLD++ A  + + +R   D G+ ++CTIHQPS  +   FD LL L+RGG+ +Y G LG     LI YFE   G PK     NPA WMLEV   +  ++   D+ +V+  SS  Q      +L+ E     P   D      Y+ P+  Q+     + +   WR P Y   +F + +  ++F G  ++  D+  +  + Q+  +F+ L IL
Sbjct:  991 EQRKRLSIGVELVAKPKLLVFLDEPTSGLDSQTAWSICKLIRKLADNGQAILCTIHQPSAILLAEFDRLLFLQRGGQTVYFGDLGKNFTTLINYFEKY-GAPKCPPEANPAEWMLEVIGAAPGSKANQDYYDVWLKSSEFQEMNSELDLMSEELVKKPLDDDPDRLKPYAAPYWEQYLFVTKRVFEQNWRTPSYLYSKFLLVVTSSLFNGFSFYKADRSLQGLQNQMFSVFMFLVIL 1226          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCGL_DICDI (ABC transporter G family member 21 OS=Dictyostelium discoideum GN=abcG21 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 86/239 (35.98%), Postives = 130/239 (54.39%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADS-SLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTS--KQQICRIF--LELCILFVF 706
            E+RKRLTI VELVA P I+F+DEPTSGLDA+++  +++ +R   D G  +VCTIHQPS  +FE FD +LLL +GG+ +Y G +G  S  L  YFE   GV    E+ NPA ++LE     V  +  +++ E +  S  L +  +EL    +  P  + D   P +++     Q    + +    +WR+P Y    F  + +  +  G  +W     +S   Q++  IF  L L IL +F
Sbjct:  964 EERKRLTIGVELVAKPHILFLDEPTSGLDAQSSYNIVKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILLLAKGGKTVYFGDIGERSKTLTSYFERY-GVRPCTESENPAEYILEATGAGVHGKSDVNWPETWKQSPELQEIERELAALEAAGPSSTEDHGKPREFATSVWYQTIEVYKRLNLIWWRDPFYTYGSFIQSALAGLIIGFTFWSLQGSSSDMNQRVFFIFEALILGILLIF 1201          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCGB_DICDI (ABC transporter G family member 11 OS=Dictyostelium discoideum GN=abcG11 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.766e-33
Identity = 87/244 (35.66%), Postives = 132/244 (54.10%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFP------TKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTS--KQQICRIF--LELCILFVF 706
            E+RKRLTI VELVA P I+F+DEPTSGLDA+++  +++ +R   D G  +VCTIHQPS  +FE FD +LLL +GG+ +Y G +G +S  L  YFE   GV    E+ NPA ++LE     V  +  +++ E +  S       ++ +EL+      +  Y P       ++SQ    Q +  + +    +WR+P Y    F    +  +  G  +W+    +S   Q+I  IF  L L IL +F
Sbjct:  954 EERKRLTIGVELVAKPQILFLDEPTSGLDAQSSYNIIKFIRKLADAGMPLVCTIHQPSSVLFEHFDRILLLAKGGKTVYFGDIGEKSKTLTSYFER-HGVRPCTESENPAEYILEATGAGVHGKSDVNWPEAWKQS---PELADISRELAALKEQGAQQYKPRSDGPAREFSQSTWYQTKEVYKRLNLIWWRDPYYTYGSFVQAALCGLIIGFTFWNLQGSSSDMNQRIFFIFEALMLGILLIF 1193          
The following BLAST results are available for this feature:
BLAST of FC920364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
AB43G_ARATH1.959e-7155.08ABC transporter G family member 43 OS=Arabidopsis ... [more]
ABCGJ_DICDI1.467e-3436.05ABC transporter G family member 19 OS=Dictyosteliu... [more]
ABCGH_DICDI1.467e-3437.55ABC transporter G family member 17 OS=Dictyosteliu... [more]
CDR2_CANAL2.502e-3436.55Multidrug resistance protein CDR2 OS=Candida albic... [more]
PDR12_YEAST4.267e-3436.62ATP-dependent permease PDR12 OS=Saccharomyces cere... [more]
CDR3_CANAL4.267e-3437.45Opaque-specific ABC transporter CDR3 OS=Candida al... [more]
CDR1_CANAL4.267e-3439.25Multidrug resistance protein CDR1 OS=Candida albic... [more]
CDR4_CANAL5.573e-3436.29ABC transporter CDR4 OS=Candida albicans GN=CDR4 P... [more]
ABCGL_DICDI9.506e-3435.98ABC transporter G family member 21 OS=Dictyosteliu... [more]
ABCGB_DICDI2.766e-3335.66ABC transporter G family member 11 OS=Dictyosteliu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007D03EF RVDevelop1 Citrus clementina cDNA clone C32007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920364 ID=FC920364; Name=FC920364; organism=Citrus clementina; type=EST; length=710bp
GACAGAGCAAAGGAAGAGATTGACGATTGCTGTAGAATTGGTTGCTAACC
CTTCTATCATCTTCATGGATGAGCCTACATCTGGGCTTGATGCTAGAGCT
GCTGCTATTGTCATGCGTACTGTTAGAAATACAGTGGATACAGGGAGAAC
AGTTGTGTGTACAATCCACCAGCCAAGCATAGACATTTTTGAAGCATTTG
ACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCGTCATTTATGCTGGACCT
CTTGGTCACGAATCTCACAAGCTCATAGAGTATTTTGAGGCTGTTCCAGG
GGTTCCTAAAATTAAGGAAGCATACAATCCTGCAACATGGATGCTGGAGG
TCGGTAACATTTCAGTTGAGAATCAACTGGGAATTGATTTTGCTGAAGTT
TATGCCGATTCATCGCTTCATCAGAGGAATAAGGAACTTATCAAAGAGCT
TAGTACTCCACCACCTGGCTCGTCAGATCTCTACTTCCCAACCAAATACT
CTCAACCATTTTTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGG
TCTTATTGGAGAAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCT
TGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGA
CTTCCAAACAACAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTT
GTATTTTCCT
back to top