FC920364

Overview
NameFC920364
Unique NameFC920364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:468..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: YN99_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YNR070W OS=Saccharomyces cerevisiae GN=YNR070W PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.376e-30
Identity = 72/218 (33.03%), Postives = 127/218 (58.26%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSII-FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADS----SLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKG 643
            EQRK+L+I VELV  P ++ F+DEPTSGLD+++A  V++ ++     G++++CTIHQPS  +FE FD LLLL +GG+ IY G +G  S  +I+YFE   G  K ++  NPA ++LE         +  ++ +++  S    +++++  ++IK+LS+     +     +KY+  +  QF     +   ++WRN  Y   +  + ++  +F G  ++  G
Sbjct:  872 EQRKKLSIGVELVGKPDLLLFLDEPTSGLDSQSAWAVVKMLKRLALAGQSILCTIHQPSATLFEQFDRLLLLGKGGQTIYFGEIGKNSSSVIKYFEK-NGARKCQQNENPAEYILEAIGAGATASVQQNWPDIWQKSHEYANINEKINDMIKDLSSTTLHKTATR-ASKYATSYSYQFHHVLKRSSLTFWRNLNYIMAKMMLLMISGLFIGFTFFHVG 1087          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDH1_CANGA (ATP-binding cassette transporter CGR1 OS=Candida glabrata GN=PDH1 PE=3 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 6.376e-30
Identity = 80/233 (34.33%), Postives = 127/233 (54.51%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSI-IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADS----SLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW--DKGQKTSKQQICRIFL 682
            EQRKRLTI VEL A P + +F+DEPTSGLD++ A    + ++   + G+ ++CTIHQPS  + + FD LL L++GG+ +Y G LG     +I+YFE   G  K     NPA WMLEV   +  +    D+ EV+ +S     + Q  +++ KELS      +D     +++     QF+    + +  YWR P Y   ++ +T+   +F G  ++  D   +  + Q+  IF+
Sbjct: 1029 EQRKRLTIGVELAAKPKLLVFLDEPTSGLDSQTAWATCQLMKKLANHGQAILCTIHQPSAMLMQEFDRLLFLQKGGQTVYFGDLGKGCKTMIKYFED-HGAHKCPPDANPAEWMLEVVGAAPGSHANQDYHEVWRNSEQFKQVKQELEQMEKELSQKEL-DNDEDANKEFATSLWYQFQLVCVRLFQQYWRTPDYLWSKYILTIFNQLFIGFTFFKADHTLQGLQNQMLSIFM 1259          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG6_DICDI (ABC transporter G family member 6 OS=Dictyostelium discoideum GN=abcG6 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.855e-29
Identity = 80/233 (34.33%), Postives = 132/233 (56.65%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNIS--VE----NQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIY--WDKGQKTSKQQICRIF 679
            QRKR+ I VEL +NP I+F+DEPTSGLD+  A  V+  V        RTV+CT+HQPS  IFE FD+LLLLK+GG  IY GPLG++S  +++Y + +     IK   NPA +++ + +    VE     Q+ +D  + Y +S + ++  E+++    P       Y  ++++  ++TQFRA   + + S  R P         ++++A+  G ++   D  QK ++ ++  +F
Sbjct: 1069 QRKRVNIGVELASNPEILFLDEPTSGLDSGDAFKVIDVVNKIAKVMNRTVICTVHQPSAAIFEFFDQLLLLKQGGETIYFGPLGNQSSVILDYCDKLG--MHIKPHINPADFVMTLADQGKMVEGPNGEQVPLDAKKAYFESDICKKEYEIMEGQLIPDDFVIKTY-DSRFASSWMTQFRALCMRSWLSRLRRPAIFVSNCIRSILLAVLLGTLFVRMDYEQKDARSRVSLLF 1298          

HSP 2 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 59/236 (25.00%), Postives = 102/236 (43.22%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNI--------SVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPT-----------KYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTS 655
            Q+KR+TI V ++   +++ MDEPTSGLD+  +  ++  V+  V  G +  + T+ QPS+ +   FD L++L + GR+ Y GP+    +K + YF+ +          NPA +  EV +           + +   DF   Y +S  +   K+L++++     G  D   P             Y      Q + C  + +    RN      R    +   +  G +YW  G   S
Sbjct:  288 QKKRVTIGVGVIKGSNLLLMDEPTSGLDSSTSFEILSDVKKFVTYGYSPALITLLQPSVQLTSLFDNLMILNK-GRICYFGPM----NKALGYFKKLGFA--CPSHNNPAEFFQEVVDAPERYSFIHPPKCKTSKDFVRAYRESEFY---KDLMEKMDANKDGIVDDNKPKVLVDSTAKELGMYPHGIGYQTKICMKRGFTMIRRNYYNFLTRVAKGIFFGLLLGTLYWRIGHNQS 513          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG5_DICDI (ABC transporter G family member 5 OS=Dictyostelium discoideum GN=abcG5 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.855e-29
Identity = 80/233 (34.33%), Postives = 132/233 (56.65%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNIS--VENQLG----IDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIY--WDKGQKTSKQQICRIF 679
            QRKR+ I VEL +NP I+F+DEPTSGLD+  A  V+  V        RTV+CT+HQPS  IFE FD+LLLLK+GG  IY GPLG++S  +++Y + +     IK   NPA +++ + +    VE   G    +D  + Y +S++ ++  E+++    P       Y  ++++  ++TQFRA   + + S  R P         ++++A+  G ++   D  QK ++ ++  +F
Sbjct: 1044 QRKRVNIGVELASNPEILFLDEPTSGLDSGDAFKVIDVVNKIAKVMNRTVICTVHQPSAAIFEFFDQLLLLKKGGETIYFGPLGNQSSVILDYCDKLG--MHIKPHINPADFVMTLADEGKMVEGPNGEQEHLDAKKAYFESNICKKEYEIMEGQLIPDDFVVKTY-DSRFASSWMTQFRALCMRSWLSRLRRPAIFVSNCLRSILLAVLLGTLFVRMDYEQKDARSRVSLLF 1273          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.499e-28
Identity = 80/236 (33.90%), Postives = 125/236 (52.97%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLG-----IDFAEVYADSSLHQRNKELIKEL--STPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIY--WDKGQKTSKQQICRIFLEL 688
            QRKR+ I VEL ++P ++F+DEPTSGLD+ AA  VM  ++    +GR+++CTIHQPS  IF+ FD LLLLKRGG  +Y GP G +S  L+ YFE    +       NPA ++L+V +  +E  L          + Y +S L   N +L+ ++     P G+    F   YS  + TQF     + + +  R  Q    R   +L + +  G ++   ++ Q+    ++  +F  L
Sbjct:  864 QRKRVNIGVELASDPQLLFLDEPTSGLDSSAALKVMNLIKKIASSGRSIICTIHQPSTSIFKQFDHLLLLKRGGETVYFGPTGDKSADLLGYFENHGLI--CDPLKNPADFILDVTDDVIETTLDGKPHQFHPVQQYKESQL---NSDLLAKIDAGVMPVGTPVPEFHGVYSSSYQTQFVELGKRSWLAQVRRVQNIRTRLMRSLFLGVVLGTLFVRMEETQENIYNRVSILFFSL 1094          

HSP 2 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 60/249 (24.10%), Postives = 111/249 (44.58%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEV---------GNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPG---SSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW--DKGQKTSKQQICRIFLELCILFVFS 709
            Q+KR+TI VE+V +  +  MDEP++GLD+     +M+  R   +  + + +  + QP +++ + FD  L++   G ++Y GP+       I YFE +    K+ + +NPA +  E+         G      +   +FA  Y +S++ Q    ++ +L    P      D     KY  P   Q R    + +     +     +R   ++V+ +  G +++  D  Q     +   IF  L +  VFS
Sbjct:  202 QKKRVTIGVEMVKDAGLFLMDEPSTGLDSTTTLELMKHFRELSNVNQVSSLVALLQPGVEVTKLFD-FLMIMNAGHMVYFGPMS----DAISYFEGLGF--KLPKHHNPAEFFQEIVDEPELYFEGEGEPPLRGAEEFANAYKNSAMFQ---SIVNDLDNTQPDLTFCKDSSHLPKYPTPLSYQIRLASIRAFKMLISSQVAVRMRIIKSIVMGLILGSLFYGLDLNQTDGNNRSGLIFFSL-LFIVFS 439          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCGI_DICDI (ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 58/122 (47.54%), Postives = 83/122 (68.03%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAY-NPATWMLEVGNISVE 370
            QRKR+ + +EL ++P ++F+DEPTSGLD+ AA  VM  ++    +GR+V+CTIHQPS  IF+ FD LLLLKRGG  +Y GP G  S  ++ YF A  G+  I + + NPA ++L+V    +E
Sbjct:  957 QRKRVNMGIELASDPQLLFLDEPTSGLDSSAALKVMNLIKKIASSGRSVICTIHQPSTTIFKKFDHLLLLKRGGETVYFGPTGTNSKIVLNYF-AERGL--ICDPFKNPADFILDVTEDIIE 1075          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG4_HUMAN (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 78/240 (32.50%), Postives = 121/240 (50.42%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEV------YADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSK---QQICRIFLELCILF 700
            QRKRL IA+ELV NP ++F DEPTSGLD+ +   V+  +++    GRT++CTIHQPS  +FE FD+L +L + G+ I+ G + +    LI Y + + G+      +NPA +++EV +    +   + F  V       A+        E+       PP    +   T ++   LTQF   F + + S  R+     +RF   +VI +  GL+Y   G   SK      C  F  L ++F
Sbjct:  205 QRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQ-GQCIFKGVVTN----LIPYLKGL-GL-HCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCAMAEKKSSPEKNEVPAPCPPCPPEVDPIESHT-FATSTLTQFCILFKRTFLSILRDTVLTHLRFMSHVVIGVLIGLLYLHIGDDASKVFNNTGCLFFSMLFLMF 436          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG1_DICDI (ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.429e-21
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGID 388
            +R+R+TI++EL+  PS+I +DEPTSGLDA  +  VM  ++    +GRT++CTIHQP  +I++ FD LLLL  G  + Y      +++K +EYF A        E  NPA + L++ N  VE+Q   D
Sbjct:  268 ERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYYG-----KANKALEYFNA--NGYHCSEKTNPADFFLDLINTQVEDQADSD 387          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG2_MACMU (ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.142e-21
Identity = 71/232 (30.60%), Postives = 117/232 (50.43%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAY-NPATWMLEVGN---ISVENQLGIDF-------------------AEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 634
            +RKR +I +EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L LL   GR+++ GP    + + + YFE+        EAY NPA + L++ N    +V      DF                   AE+Y DSS ++  K  + +LS        ++    Y+  F  Q R    + + +   NPQ +  +  +T+++ +  G IY+
Sbjct:  190 ERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLL-ASGRLMFHGP----AQEALGYFES---AGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSKRDKPLVEKLAEIYVDSSFYKETKAELHQLSGGEKKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVILGLVIGAIYF 413          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 69/239 (28.87%), Postives = 117/239 (48.95%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYS------------QPFLTQFRACFWKQYW----SYW----RNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ 664
            ++KRL++A EL+A+PS+IF DEPT+GLDA  A  VM T++     G TV+C+IHQP   ++  FD+++LL   G ++YAGP G E       F  +       E  NPA ++ ++        + +D++      S  +R   L+   S     SS + + T  S            +  + +    +W+Q++      W    R+   N +R  M++  A+ FG ++W  G+  +  Q
Sbjct:  220 EKKRLSLACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDIVLLTE-GTLVYAGPAGKEPLTYFGNFGFL-----CPEHVNPAEFLADL--------ISVDYSSSETVYSSQKRVHALVDAFS---QRSSSVLYATPLSMKEETKNGMRPRRKAIVERTDGWWRQFFLLLKRAWMQASRDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQ 441          
The following BLAST results are available for this feature:
BLAST of FC920364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
YN99_YEAST6.376e-3033.03Uncharacterized ABC transporter ATP-binding protei... [more]
PDH1_CANGA6.376e-3034.33ATP-binding cassette transporter CGR1 OS=Candida g... [more]
ABCG6_DICDI1.855e-2934.33ABC transporter G family member 6 OS=Dictyostelium... [more]
ABCG5_DICDI1.855e-2934.33ABC transporter G family member 5 OS=Dictyostelium... [more]
ABCG2_DICDI3.499e-2833.90ABC transporter G family member 2 OS=Dictyostelium... [more]
ABCGI_DICDI4.003e-2447.54ABC transporter G family member 18 OS=Dictyosteliu... [more]
ABCG4_HUMAN8.347e-2232.50ATP-binding cassette sub-family G member 4 OS=Homo... [more]
ABCG1_DICDI2.429e-2141.73ABC transporter G family member 1 OS=Dictyostelium... [more]
ABCG2_MACMU4.142e-2130.60ATP-binding cassette sub-family G member 2 OS=Maca... [more]
AB7G_ARATH2.056e-2028.87ABC transporter G family member 7 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC32007D03EF RVDevelop1 Citrus clementina cDNA clone C32007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920364 ID=FC920364; Name=FC920364; organism=Citrus clementina; type=EST; length=710bp
GACAGAGCAAAGGAAGAGATTGACGATTGCTGTAGAATTGGTTGCTAACC
CTTCTATCATCTTCATGGATGAGCCTACATCTGGGCTTGATGCTAGAGCT
GCTGCTATTGTCATGCGTACTGTTAGAAATACAGTGGATACAGGGAGAAC
AGTTGTGTGTACAATCCACCAGCCAAGCATAGACATTTTTGAAGCATTTG
ACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCGTCATTTATGCTGGACCT
CTTGGTCACGAATCTCACAAGCTCATAGAGTATTTTGAGGCTGTTCCAGG
GGTTCCTAAAATTAAGGAAGCATACAATCCTGCAACATGGATGCTGGAGG
TCGGTAACATTTCAGTTGAGAATCAACTGGGAATTGATTTTGCTGAAGTT
TATGCCGATTCATCGCTTCATCAGAGGAATAAGGAACTTATCAAAGAGCT
TAGTACTCCACCACCTGGCTCGTCAGATCTCTACTTCCCAACCAAATACT
CTCAACCATTTTTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGG
TCTTATTGGAGAAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCT
TGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGA
CTTCCAAACAACAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTT
GTATTTTCCT
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