FC920364

Overview
NameFC920364
Unique NameFC920364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:468..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB22G_ARATH (ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 71/252 (28.17%), Postives = 118/252 (46.83%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGN-----ISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKY-------------------------SQPFLTQFRACFWKQYWSYW-------RNPQYNAIRFGMTLVIAIFFGLIYWDKGQKT 652
            +RKR++I  E++ NPS++ +DEPTSGLD+  A   +  + +  + G+TV+ TIHQPS  +F  FD+L+LL RG  ++Y G    +S + ++YF ++   P I  A NPA ++L++ N     ISV ++L         D  +   N     +   P P +   Y    Y                         S     Q+  C+W+QY   +       R+  ++ +R    L  A+  GL++W    +T
Sbjct:  307 ERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGS-LLYFG----KSSEALDYFSSIGCSPLI--AMNPAEFLLDLANGNINDISVPSEL---------DDRVQVGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQEKKKLLDPVPLDEEAKAKSTRLKRQWGTCWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQSDIRT 542          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCGG_DICDI (ABC transporter G family member 16 OS=Dictyostelium discoideum GN=abcG16 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 49/115 (42.61%), Postives = 74/115 (64.35%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLE 349
            EQRKR+ IA+E+ + P I+F+DEPT+GL + AA ++M+ ++     GR+V+CTIHQPS  IF+ FD +LLL +GG V Y G LG     ++ Y   +       +  NPA ++L+
Sbjct:  987 EQRKRVNIAIEMASLPDILFLDEPTTGLTSVAAELIMQLIKRVALDGRSVICTIHQPSETIFKKFDSILLLTQGGFVAYFGELGPNCRTVLNYCSDLGF--NCPQGKNPADFLLD 1099          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: WHITE_LUCCU (Protein white OS=Lucilia cuprina GN=W PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 63/214 (29.44%), Postives = 113/214 (52.80%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNI----SVENQLGID-FAEVYADSSLHQRNKELIKELSTPPPG-SSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIY 631
            +RKRL  A E + +P ++  DEPTSGLD+  AA V++ ++     G+TV+ TIHQPS ++FE FD++LL+   GRV + G       + +++F  +    +    YNPA + ++V  +     +E++  I    + +A   + +  ++  ++++    G   D      Y   + TQFRA  W+ + S  + P    +R   T ++A+  GLI+
Sbjct:  234 ERKRLAFASEALTDPPLLICDEPTSGLDSFMAASVVQVLKKLSQRGKTVILTIHQPSSELFELFDKILLMAE-GRVAFLG----TPVEAVDFFSFIGA--QCPTNYNPADFYVQVLAVVPGREIESRDRISKICDNFAVGKVSREMEQNFQKIAAKTDGLQKDDETTILYKASWFTQFRAIMWRSWISTLKEPLLVKVRLIQTTMVAVLIGLIF 440          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: WHITE_DROME (Protein white OS=Drosophila melanogaster GN=w PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 66/219 (30.14%), Postives = 106/219 (48.40%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQL-----------GIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIY 631
            +RKRL  A E + +P ++  DEPTSGLD+  A  V++ ++     G+TV+ TIHQPS ++FE FD++LL+   GRV + G       + +++F  V    +    YNPA + ++V  +    ++               ++V  D       K L K L  P  G +       Y   +  QFRA  W+ + S  + P    +R   T ++AI  GLI+
Sbjct:  245 ERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAE-GRVAFLG----TPSEAVDFFSYVGA--QCPTNYNPADFYVQVLAVVPGREIESRDRIAKICDNFAISKVARDMEQLLATKNLEKPLEQPENGYT-------YKATWFMQFRAVLWRSWLSVLKEPLLVKVRLIQTTMVAILIGLIF 449          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCGM_DICDI (ABC transporter G family member 22 OS=Dictyostelium discoideum GN=abcG22 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 66/212 (31.13%), Postives = 109/212 (51.42%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTK---YSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIY 631
            +++R++I   LV +PSI+ +DEPTSGLD  +A  VM+T V  T     TV+CTIHQP  +IF+ F ++++L   GR++Y G      ++ +E+F  + G P   +  NPA ++L+      E     + A+    S L Q N+E    L+    G  +     K   Y+    TQF   + +    + RNP    +RF + + + + FG  +
Sbjct:  182 EKRRVSIGCGLVTSPSIVLLDEPTSGLDTTSAMAVMKTLVELTQQKSVTVICTIHQPRSEIFKLFTKIMVLAE-GRLVYYG------NRPVEHFTEI-GFP-FPDQTNPADYILDAVTTIKEEGRADEIADRLQSSYLDQANQESSSTLTQSQLGIINASGKRKINAYNNGLFTQFLVLWKRTGLDFIRNPSNCLVRFAVAVFVGLLFGACF 384          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG1_MOUSE (ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 73/240 (30.42%), Postives = 116/240 (48.33%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPP--------PGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQICRIFLELCILFV 703
            QRKRL IA+ELV NP ++F DEPTSGLD+ +   V+  ++     GR++VCTIHQPS  +FE FD+L +L + G+ +Y G + +    L+ Y   + G+      +NPA +++EV +    +Q       V          ++L  +    P          S+ +     +S   LTQF   F + + S  R+     +R    + I +  GL+Y   G +  K      FL   +LF+
Sbjct:  221 QRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIVCTIHQPSAKLFELFDQLYVLSQ-GQCVYRGKVSN----LVPYLRDL-GL-NCPTYHNPADFVMEVASGEYGDQNSRLVRAVREGMCDADYKRDLGGDTDVNPFLWHRPAEEDSASMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFL 453          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG1_HUMAN (ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 81/255 (31.76%), Postives = 124/255 (48.63%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQ--------------------LGIDFAEVYADSSLHQRNKELIKE---LSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQICRIFLELCILFV 703
            QRKRL IA+ELV NP ++F DEPTSGLD+ +   V+  ++     GR+++CTIHQPS  +FE FD+L +L + G+ +Y G + +    L+ Y   + G+      +NPA +++EV +    +Q                    LG D AEV  +  L  R  E +K+   L      SS +     +S   LTQF   F + + S  R+     +R    + I +  GL+Y   G +  K      FL   +LF+
Sbjct:  221 QRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQ-GQCVYRGKVCN----LVPYLRDL-GL-NCPTYHNPADFVMEVASGEYGDQNSRLVRAVREGMCDSDHKRDLGGD-AEV--NPFLWHRPSEEVKQTKRLKGLRKDSSSMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFL 465          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG2_HUMAN (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 72/233 (30.90%), Postives = 116/233 (49.79%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAY-NPATWMLEVGN---ISVENQLGIDF-------------------AEVYADSSLHQRNKELIKELSTPPPGSSDLYF-PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 634
            +RKR +I +EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L LL   GR+++ GP    + + + YFE+        EAY NPA + L++ N    +V      DF                   AE+Y +SS ++  K  + +LS          F    Y+  F  Q R    + + +   NPQ +  +  +T+V+ +  G IY+
Sbjct:  190 ERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLL-ASGRLMFHGP----AQEALGYFES---AGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSKQDKPLIEKLAEIYVNSSFYKETKAELHQLSGGEKKKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVVLGLVIGAIYF 414          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AUS1_YEAST (ATP-dependent permease AUS1 OS=Saccharomyces cerevisiae GN=AUS1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 68/224 (30.36%), Postives = 109/224 (48.66%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSII-FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLE-VGNISVE------------NQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQP-FLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 634
            QRK L+I VELV  PS++ F+DEPTSGLDA AA  +++ ++     G+ + CTIHQPS  +   FD + LLKRGG  ++ GP+       + +      +   KE  NPA ++++ VGN +              N+  ID++ ++  S   +  K+    L      S   Y  + + QP +L Q      +QY    R+  Y   ++ +     +F G  +W
Sbjct:  881 QRKLLSIGVELVTKPSLLLFLDEPTSGLDAEAALTIVKFLKQLSLQGQAIFCTIHQPSKSVISHFDNIFLLKRGGECVFFGPMDDACGYFMSHDNT---LVYDKEHDNPADFVIDAVGNSNSSAGKDTAEEALTLNKEAIDWSALWESSVEKKLVKKETARLEDDARASGVDYTTSLWKQPSYLQQLALITRRQYICTKRDMTYVMAKYCLNGGAGLFIGFSFW 1101          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG2_MOUSE (ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 67/238 (28.15%), Postives = 119/238 (50.00%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEV--GNISV---------------------ENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQP-----FLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWD 637
            +RKR +I +EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L LL   G++++ GP    + K +EYF +       +   NPA + L+V  G+ S                      E  +  + +E Y +S+++   K  + +L    PG+ +    + + +P     F  Q R    + + +   NPQ +  +  +T+++ +  G IY+D
Sbjct:  189 ERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLA-SGKLVFHGP----AQKALEYFASAGY--HCEPYNNPADFFLDVINGDSSAVMLNREEQDNEANKTEEPSKGEKPVIENLSEFYINSAIYGETKAELDQL----PGAQEKKGTSAFKEPVYVTSFCHQLRWIARRSFKNLLGNPQASVAQLIVTVILGLIIGAIYFD 415          
The following BLAST results are available for this feature:
BLAST of FC920364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
AB22G_ARATH2.056e-2028.17ABC transporter G family member 22 OS=Arabidopsis ... [more]
ABCGG_DICDI3.507e-2042.61ABC transporter G family member 16 OS=Dictyosteliu... [more]
WHITE_LUCCU4.580e-2029.44Protein white OS=Lucilia cuprina GN=W PE=2 SV=2[more]
WHITE_DROME4.580e-2030.14Protein white OS=Drosophila melanogaster GN=w PE=1... [more]
ABCGM_DICDI5.982e-2031.13ABC transporter G family member 22 OS=Dictyosteliu... [more]
ABCG1_MOUSE1.020e-1930.42ATP-binding cassette sub-family G member 1 OS=Mus ... [more]
ABCG1_HUMAN1.020e-1931.76ATP-binding cassette sub-family G member 1 OS=Homo... [more]
ABCG2_HUMAN1.333e-1930.90ATP-binding cassette sub-family G member 2 OS=Homo... [more]
AUS1_YEAST1.740e-1930.36ATP-dependent permease AUS1 OS=Saccharomyces cerev... [more]
ABCG2_MOUSE3.877e-1928.15ATP-binding cassette sub-family G member 2 OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionC32007D03EF RVDevelop1 Citrus clementina cDNA clone C32007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920364 ID=FC920364; Name=FC920364; organism=Citrus clementina; type=EST; length=710bp
GACAGAGCAAAGGAAGAGATTGACGATTGCTGTAGAATTGGTTGCTAACC
CTTCTATCATCTTCATGGATGAGCCTACATCTGGGCTTGATGCTAGAGCT
GCTGCTATTGTCATGCGTACTGTTAGAAATACAGTGGATACAGGGAGAAC
AGTTGTGTGTACAATCCACCAGCCAAGCATAGACATTTTTGAAGCATTTG
ACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCGTCATTTATGCTGGACCT
CTTGGTCACGAATCTCACAAGCTCATAGAGTATTTTGAGGCTGTTCCAGG
GGTTCCTAAAATTAAGGAAGCATACAATCCTGCAACATGGATGCTGGAGG
TCGGTAACATTTCAGTTGAGAATCAACTGGGAATTGATTTTGCTGAAGTT
TATGCCGATTCATCGCTTCATCAGAGGAATAAGGAACTTATCAAAGAGCT
TAGTACTCCACCACCTGGCTCGTCAGATCTCTACTTCCCAACCAAATACT
CTCAACCATTTTTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGG
TCTTATTGGAGAAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCT
TGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGA
CTTCCAAACAACAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTT
GTATTTTCCT
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