FC920364

Overview
NameFC920364
Unique NameFC920364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:468..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: WHT1_CAEEL (ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 72/225 (32.00%), Postives = 111/225 (49.33%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWML------------EVGNISVENQ--LGIDFAEVYADSSLHQRNKELIKELSTPPPGS--SDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 634
            ++KRL+ A E++  P I+F DEPTSGLDA  A  V++ +R+  D G TV+ TIHQPS  ++  F+ + L+   GRVIY GP G ++  L E      G P     YNPA  ++             +  IS   Q  L  D  +  +  ++   NK       T    S  +  +F   Y+  F TQF A FW+ + +  R+P   ++R    L+ A   G++++
Sbjct:  141 EKKRLSFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSLADNGMTVIITIHQPSSHVYSLFNNVCLM-ACGRVIYLGP-GDQAVPLFEKC----GYP-CPAYYNPADHLIRTLAVIDSDRATSMKTISKIRQGFLSTDLGQ--SVLAIGNANKLRAASFVTGSDTSEKTKTFFNQDYNASFWTQFLALFWRSWLTVIRDPNLLSVRLLQILITAFITGIVFF 356          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: WHITE_CERCA (Protein white OS=Ceratitis capitata GN=W PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 63/217 (29.03%), Postives = 109/217 (50.23%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNI----SVENQLGI-----DFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIY 631
            +RKRL  A E + +P ++  DEPTSGLD+  A  V++ ++     G+TV+ TIHQPS ++FE FD++LL+   GRV + G  G    + +++F  +         Y PA + ++V  +     VE++  +     +FA       + Q  ++L+K         ++      Y   +  QFRA  W+ + S  + P    +R   T ++A+  GLI+
Sbjct:  236 ERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAE-GRVAFLGTPG----EAVDFFSYIGAT--CPTNYTPADFYVQVLAVVPGREVESRDRVAKICDNFAVGKVSREMEQNFQKLVKSNGFGKEDENEY----TYKASWFMQFRAVLWRSWLSVLKEPLLVKVRLLQTTMVAVLIGLIF 441          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG2_RAT (ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 73/253 (28.85%), Postives = 122/253 (48.22%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEV--GNISV---------------------ENQLGIDFAEVYADSSLHQRNKELIKEL--STPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWD-KGQKTSKQQICRIFLEL 688
            +RKR +I +EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L LL   G++++ GP    + K +EYF +       +   NPA + L+V  G+ S                      E  +  + AE Y +S+++   K  + +L  +    GSS    P  Y   F  Q R    + + +   NPQ +  +  +T+++ +  G +Y+  K   T  Q    +F  L
Sbjct:  189 ERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLL-ASGKLMFHGP----AQKALEYFASAG--YHCEPYNNPADFFLDVINGDSSAVMLNRGEQDHEANKTEEPSKREKPIIENLAEFYINSTIYGETKAELDQLPVAQKKKGSSAFREPV-YVTSFCHQLRWIARRSFKNLLGNPQASVAQLIVTVILGLIIGALYFGLKNDPTGMQNRAGVFFFL 433          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR1_SCHPO (ATP-binding cassette transporter pdr1 OS=Schizosaccharomyces pombe GN=pdr1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 58/221 (26.24%), Postives = 114/221 (51.58%), Query Frame = 2
Query:   11 RKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFP--TKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ 664
            ++ L+IAVEL A P SI+ +DEP +GLD+++A +++  ++    +G +++C++ QPS  I E FD +L+L   G  +Y   +G +  KL+ YF+ + G    + + + A ++L      ++     D+A  +A ++ H++  E +  +   P  + D  FP  T++   F  Q      + + +YWR+      R    +V  +  G  ++ +G    + Q
Sbjct:  904 KRLLSIAVELSARPGSILLLDEPANGLDSQSAWMLVCILQKLARSGLSILCSVSQPSSRILELFDMMLILDLNGNTVYYDTMGRDLSKLVNYFKRIHGTN--EHSKDTADFVLHCIQF-LKQGPEFDYAGAWASTNTHKQIIEHVNFIMDNPELTDD-DFPNETRFMTSFFFQIYKISMRNFVAYWRDSSLLRARVAFNIVAGLIIGFSFYKQGVGVEETQ 1120          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: WHT3_CAEEL (ABC transporter ATP-binding protein/permease wht-3 OS=Caenorhabditis elegans GN=wht-3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 69/219 (31.51%), Postives = 114/219 (52.05%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQ------LGIDFAEVYADSSLHQRNKELIKELSTP--PPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDK 640
            + +RLT A EL++NPS++F DEPTSGLD+  AA V++ ++N  ++GRT+   IHQP+ ++F  FD+++ L  G       P  HES K    F A  G P I + +NP  W+    ++   N+      +G    E Y  S +HQ++   I+ ++T   PP   +   P  +++      RAC         R+P    ++    +V+ +F G +YW +
Sbjct:  184 EARRLTFACELLSNPSLLFADEPTSGLDSFMAASVVQILKNLANSGRTL---IHQPTAELFFQFDKIIFLSMGKTAFMGTP--HESVK----FFADCGHP-IPKLFNPPEWIQSKLSVIPNNETKSRETIG-KIIEFYEKSIIHQKSIVEIRVIATTELPPYIEN---PGFFAETGALLKRACL-----DVIRSPAQMRMKLIQKVVMGLFIGSLYWQQ 383          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCGC_DICDI (ABC transporter G family member 12 OS=Dictyostelium discoideum GN=abcG12 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 69/227 (30.40%), Postives = 118/227 (51.98%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFW----KQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQICRI 676
            +++R++I   LV NPS+IF+DEPTSGLD+ AA  +M+T+ N    G TV+C+IHQP  +IF  F++++++ + G++IY+G        ++EYFE++ G P      NPA + L+    +VE   G  + E+         N EL+ E+  P         P    +P    +   +W    + +  + RN      R G  +V  + FG+ +   G K ++  + +I
Sbjct:  205 EKRRVSIGCGLVTNPSLIFLDEPTSGLDSVAALQIMKTLLNLTLKGVTVICSIHQPRPEIFALFNKVMVIIK-GKMIYSG------SNILEYFESL-GYP-CPNNTNPADFCLD---SAVEIGEGERYTEICNQWQKIWEN-ELLNEIEYP---------PVNVEKPKTASWGYQYWILLGRTWKDFLRNQGNFVARVGTAVVTGLLFGVCF--AGLKETEADVQKI 407          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 68/234 (29.06%), Postives = 114/234 (48.72%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEV--GNISV---------------------ENQLGIDFAEVYADSSLHQRNK-ELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWD 637
            +RKR +IA+EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L LL   GR+++ GP    + + + YF ++      +   NPA + L+V  G+ S                      +  L    A  Y +SS  +  K EL +         S +Y    Y+  F  Q R    + + +   NPQ +  +  +T+++ +  G I++D
Sbjct:  190 ERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLL-ASGRLMFHGP----AREALGYFASIG--YNCEPYNNPADFFLDVINGDSSAVVLSRADRDEGAQEPEEPPEKDTPLIDKLAAFYTNSSFFKDTKVELDQFSGGRKKKKSSVYKEVTYTTSFCHQLRWISRRSFKNLLGNPQASVAQIIVTIILGLVIGAIFYD 416          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB26G_ARATH (ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 73/262 (27.86%), Postives = 128/262 (48.85%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWML-----EVGNISVENQL------GIDFAEVY--------------ADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTS---KQQICRIFLELCILFVFS 709
            +RKR +IA E++ +PS++ +DEPTSGLD+ +A  ++  ++     GRTV+ TIHQPS  +F  FD+LLL+  G    Y      ++ + +EYF ++  +P+I  A NPA ++L     +V +IS+ ++L        D  EV                +   + RN++  + L        D  +   +   FL   R  F ++     R   ++ +R   +L +A+  GL++W     T    + Q+  +F  +CI +  S
Sbjct:  241 ERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGHPAFYG-----KARESMEYFSSLRILPEI--AMNPAEFLLDLATGQVSDISLPDELLAAKTAQPDSEEVLLKYLKQRYKTDLEPKEKEENHRNRKAPEHLQIAIQVKKD--WTLSWWDQFLILSRRTFRER-----RRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAHLRDQVGLMFY-ICIFWTSS 487          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: WHITE_ANOGA (Protein white OS=Anopheles gambiae GN=w PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 63/219 (28.77%), Postives = 111/219 (50.68%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGI-DFAEVYADS-SLHQRNKELIKELSTPPPGSSDLYF--------PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 634
            +RKRL  A E + +P ++  DEPTSGLD+  A  V++ ++     G+T++ TIHQPS +++  FD++LL+   GRV + G      ++  E+F  + G+P     YNPA + +++  I+   +    D  +   DS ++    +E+++  S    G  + Y          T Y   + TQF    W+ + S  ++P    +R   T ++A   G IY+
Sbjct:  248 ERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAMKGKTIILTIHQPSSELYCLFDKILLVAE-GRVAFLG----SPYQSAEFFSQL-GIP-CPPNYNPADFYVQMLAIAPAKEAECRDMIKKICDSFAVSPIAREVLETASVAGKGMDEPYMLQQVEGVGSTGYRSSWWTQFYCILWRSWLSVLKDPMLVKVRLLQTAMVATLIGSIYF 459          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB21G_ARATH (ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 68/230 (29.57%), Postives = 117/230 (50.87%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYAD-SSLHQRN---KELI----KELSTPPPGSSDLYFPTKYSQPFL------TQFRACFWKQYWSYWR-------NPQYNAIRFGMTLVIAIFFGLIYW 634
            +RKR++I  E++ NPS++ +DEPTSGLD+  AA ++ T+R+    GRTVV TIHQPS  ++  FD++L+L   G  IY+G    +S +++EYF ++ G        NPA ++L++ N    +    D  E       L ++N   + LI    K L  P        FP   +   L       ++   +W Q+    +       +  ++ +R  M + +++  GL++W
Sbjct:  226 ERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVTTIHQPSSRLYRMFDKVLVLSE-GCPIYSG----DSGRVMEYFGSI-GYQPGSSFVNPADFVLDLANGITSDTKQYDQIETNGRLDRLEEQNSVKQSLISSYKKNLYPPLKEEVSRTFPQDQTNARLRKKAITNRWPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSVSLLSGLLWW 449          
The following BLAST results are available for this feature:
BLAST of FC920364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
WHT1_CAEEL5.064e-1932.00ABC transporter ATP-binding protein/permease wht-1... [more]
WHITE_CERCA5.064e-1929.03Protein white OS=Ceratitis capitata GN=W PE=2 SV=1[more]
ABCG2_RAT5.064e-1928.85ATP-binding cassette sub-family G member 2 OS=Ratt... [more]
PDR1_SCHPO1.473e-1826.24ATP-binding cassette transporter pdr1 OS=Schizosac... [more]
WHT3_CAEEL1.924e-1831.51ABC transporter ATP-binding protein/permease wht-3... [more]
ABCGC_DICDI2.513e-1830.40ABC transporter G family member 12 OS=Dictyosteliu... [more]
ABCG2_PIG2.513e-1829.06ATP-binding cassette sub-family G member 2 OS=Sus ... [more]
AB26G_ARATH2.513e-1827.86ABC transporter G family member 26 OS=Arabidopsis ... [more]
WHITE_ANOGA3.282e-1828.77Protein white OS=Anopheles gambiae GN=w PE=2 SV=1[more]
AB21G_ARATH3.282e-1829.57ABC transporter G family member 21 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32007D03EF RVDevelop1 Citrus clementina cDNA clone C32007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920364 ID=FC920364; Name=FC920364; organism=Citrus clementina; type=EST; length=710bp
GACAGAGCAAAGGAAGAGATTGACGATTGCTGTAGAATTGGTTGCTAACC
CTTCTATCATCTTCATGGATGAGCCTACATCTGGGCTTGATGCTAGAGCT
GCTGCTATTGTCATGCGTACTGTTAGAAATACAGTGGATACAGGGAGAAC
AGTTGTGTGTACAATCCACCAGCCAAGCATAGACATTTTTGAAGCATTTG
ACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCGTCATTTATGCTGGACCT
CTTGGTCACGAATCTCACAAGCTCATAGAGTATTTTGAGGCTGTTCCAGG
GGTTCCTAAAATTAAGGAAGCATACAATCCTGCAACATGGATGCTGGAGG
TCGGTAACATTTCAGTTGAGAATCAACTGGGAATTGATTTTGCTGAAGTT
TATGCCGATTCATCGCTTCATCAGAGGAATAAGGAACTTATCAAAGAGCT
TAGTACTCCACCACCTGGCTCGTCAGATCTCTACTTCCCAACCAAATACT
CTCAACCATTTTTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGG
TCTTATTGGAGAAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCT
TGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGA
CTTCCAAACAACAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTT
GTATTTTCCT
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