FC920364

Overview
NameFC920364
Unique NameFC920364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:468..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: PDR11_YEAST (ATP-dependent permease PDR11 OS=Saccharomyces cerevisiae GN=PDR11 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 73/257 (28.40%), Postives = 122/257 (47.47%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSII-FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVP-GVPKIKEAYNPATWMLEV---GNISV--------------------ENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQP-FLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQ--ICRIFLELCI 694
            QRK L+I VELV  PS++ F+DEPTSGLDA AA  +++ ++     G+ ++CTIHQPS  +   FD + LLKRGG  +Y G L +      +YF A    +   +E  NPA ++++V   G+ ++                    +    I++AE++  S    R  + +  L      S   +  + +S P ++ Q +    +QY    R+  Y   ++ +     +F G  +W      +  Q  I   F+ LC+
Sbjct:  881 QRKLLSIGVELVTKPSLLLFLDEPTSGLDAEAALTIVQFLKKLSMQGQAILCTIHQPSKSVISYFDNIYLLKRGGECVYFGSLPN----ACDYFVAHDRRLTFDREMDNPADFVIDVVGSGSTNIPMDDAEKPTSSKIDEPVSYHKQSDSINWAELWQSSPEKVRVADDLLLLEEEARKSGVDFTTSVWSPPSYMEQIKLITKRQYICTKRDMTYVFAKYALNAGAGLFIGFSFWRTKHNINGLQDAIFLCFMMLCV 1133          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG2_BOVIN (ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 67/234 (28.63%), Postives = 113/234 (48.29%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGN------ISVENQLGID-----------------FAEVYADSSLHQRNK-ELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWD 637
            +RKR +IA+EL+ +PSI+F+DEPT+GLD+  A  V+  ++     GRT++ +IHQP   IF+ FD L LL   GR+++ GP    + + + YF A+    + +   NPA + L++ N      +     +G +                  AE Y +SS  +  K EL K            Y    Y+  F  Q +    + + +   NPQ +  +  +T+ + +  G I++D
Sbjct:  189 ERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLL-ASGRLMFHGP----AQEALGYFGAIGF--RCEPYNNPADFFLDIINGDSSAVVLNREDIGDEANETEEPSKKDTPLIEKLAEFYVNSSFFKETKVELDKFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKNLLGNPQASIAQLIVTVFLGLVIGAIFYD 415          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB28G_ARATH (ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 46/140 (32.86%), Postives = 81/140 (57.86%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEV--GNISVENQLGIDFAEVYADSSLH 421
            QRKR+ + +E+V  PS++ +DEPTSGLD+ ++ +++R +R     G  +   +HQPS  +F  FD+L+LL +GG + Y GP+     K+ EYF ++  V  + E  NP  + +++  G +      G+ + ++     LH
Sbjct:  644 QRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLICYQGPV----KKVEEYFSSLGIV--VPERVNPPDYYIDILEGILKPSTSSGVTYKQLPVRWMLH 777          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: SCRT_DROME (Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 66/222 (29.73%), Postives = 105/222 (47.30%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEV-----GNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFW-KQYWSYW--------RNPQYNAIRFGMTLVIAIFFGLIY 631
            +RKRL  AVEL+ NP I+F DEPT+GLD+ +A  ++ T+      G T++CTIHQPS  +F+ F+ ++LL   GRV + G   H       +    P      EAYNPA +++ V     G      +      + +A SS   + ++++  L      S +  F T+     +  FR   W K++   W        R+P    +RF   + +A   G  +
Sbjct:  220 ERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLL-ADGRVAFTGSPQHALSFFANHGYYCP------EAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSA-AKQRDMLVNLEIHMAQSGNFPFDTE-----VESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACF 428          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVEN 373
            ++KRL+IA+E++  PS++F+DEPTSGLD+ +A  V++ +RN   +G+TVV +IHQPS ++F  FD+LLLL  GG  +Y G    E+    ++F    G P      NP+   L   N   +N
Sbjct:  158 EKKRLSIALEVLTKPSLLFLDEPTSGLDSASAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLS-GGETVYFG----EAESATKFF-GEAGFP-CPSRRNPSDHFLRCVNSDFDN 272          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG4_DICDI (ABC transporter G family member 4 OS=Dictyostelium discoideum GN=abcG4 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 66/213 (30.99%), Postives = 110/213 (51.64%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVEN----QLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIY 631
            ++KR++I   LV NPS++F+DEPTSGLD+  +  VM+ +   T   G TVVC++HQP  +IF  F  ++++ + GR++Y+G        ++EY  ++    K     NPA ++L+V +  V N       +D  E Y          E+   +S  P    ++  P +    F+ Q+  C  + Y S+ R    N + F   +VIAI  GL++
Sbjct:  367 EKKRVSIGCALVTNPSLLFLDEPTSGLDSLNSLKVMKVLLELTKMKGVTVVCSVHQPRPEIFYLFSNIMVVLK-GRMVYSG------SNILEYLSSIDSNYKCPPQMNPADFILDVCDEIVNNPSQYSTTVDTWEKY-------WKHEIQPTISNDP---INIDIPKRVG--FIYQYWVCQKRSYQSFVR----NRVVFFSKIVIAILIGLLF 556          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB24G_ARATH (ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 47/141 (33.33%), Postives = 85/141 (60.28%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEV--GNISVENQLGIDFAEVYADSSLHQ 424
            QRKR+ + +E+V  PS++F+DEPTSGLD+ ++ +++R +R+    G  +   +HQPS  +F+ F++L+LL +GG  +Y G +    +K+ EYF  + G+  + +  NP  + ++V  G +      GI + E+     LH+
Sbjct:  622 QRKRVNVGLEMVMEPSVLFLDEPTSGLDSASSQLLLRALRHEALEGVNICMVVHQPSYTLFKTFNDLVLLAKGGLTVYHGSV----NKVEEYFSGL-GI-HVPDRINPPDYYIDVLEGVVISMGNSGIGYKELPQRWMLHK 756          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 73/245 (29.80%), Postives = 118/245 (48.16%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKEL------IKELSTPPPGSS--DLYFPTKYSQPFLTQFR-----------------ACFWKQ--------YWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKG 643
            +RKR++IA+E++  P I+F+DEPTSGLD+ +A  V++ +RN    GRTV+ ++HQPS ++F  FD+L LL  G  V +      E+   +E+F A  G P  K+  NP+   L          +  DF  V A     QR +E       +  L+T    +   + Y  +KY++   ++ R                 A +WKQ        + +  R+  Y   R    +V++I  G I++D G
Sbjct:  173 ERKRVSIALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFG-----EAKSAVEFF-AESGFPCPKKR-NPSDHFLRC--------INSDFDTVTATLKGSQRIQETPATSDPLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVG 402          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGN 358
            +RKR+++A+E++  P I+F+DEPTSGLD+ +A  V++ +RN   D GRTVV +IHQPS ++F  FD+L LL   G  +Y G    ES   +E+F A  G P  K+  NP+   L   N
Sbjct:  172 ERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLS-SGETVYFG----ESKFAVEFF-AEAGFPCPKKR-NPSDHFLRCIN 282          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG8_DICDI (ABC transporter G family member 8 OS=Dictyostelium discoideum GN=abcG8 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.352e-16
Identity = 70/233 (30.04%), Postives = 120/233 (51.50%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNK---ELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQICRIFLELCIL 697
            +++R++I   L+ NPS+IF+DEPTSGLD+ AA  +M+T+ N    G TV+C+IHQP  +IF+  ++++++ + G++IY+G        ++EYFE++ G P      NPA + L       ++ + I   E Y +      NK   +L  E+  P   S ++  P   S  ++ Q+     +++  + RN      R    +VI   FG  +   G K S   + +I   L  L
Sbjct:  204 EKRRVSIGCGLITNPSLIFLDEPTSGLDSVAALQIMKTLLNLTLKGVTVICSIHQPRPEIFQLINKVMVIIK-GKMIYSG------SNILEYFESL-GYP-CPNNTNPADFCL-------DSAVEIGEGERYTEICNQWENKWENQLTNEIEYP---SLNVDIPKTTS--WVYQYWILLNREWRGFIRNKGNALSRVITAIVIGALFGSCF--AGLKESDADVQKIMGTLFFL 413          
The following BLAST results are available for this feature:
BLAST of FC920364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PDR11_YEAST4.287e-1828.40ATP-dependent permease PDR11 OS=Saccharomyces cere... [more]
ABCG2_BOVIN5.599e-1828.63ATP-binding cassette sub-family G member 2 OS=Bos ... [more]
AB28G_ARATH9.550e-1832.86ABC transporter G family member 28 OS=Arabidopsis ... [more]
SCRT_DROME2.127e-1729.73Protein scarlet OS=Drosophila melanogaster GN=st P... [more]
AB13G_ARATH2.127e-1740.98ABC transporter G family member 13 OS=Arabidopsis ... [more]
ABCG4_DICDI3.629e-1730.99ABC transporter G family member 4 OS=Dictyostelium... [more]
AB24G_ARATH3.629e-1733.33ABC transporter G family member 24 OS=Arabidopsis ... [more]
AB15G_ARATH3.629e-1729.80ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB12G_ARATH1.056e-1644.07ABC transporter G family member 12 OS=Arabidopsis ... [more]
ABCG8_DICDI2.352e-1630.04ABC transporter G family member 8 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC32007D03EF RVDevelop1 Citrus clementina cDNA clone C32007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920364 ID=FC920364; Name=FC920364; organism=Citrus clementina; type=EST; length=710bp
GACAGAGCAAAGGAAGAGATTGACGATTGCTGTAGAATTGGTTGCTAACC
CTTCTATCATCTTCATGGATGAGCCTACATCTGGGCTTGATGCTAGAGCT
GCTGCTATTGTCATGCGTACTGTTAGAAATACAGTGGATACAGGGAGAAC
AGTTGTGTGTACAATCCACCAGCCAAGCATAGACATTTTTGAAGCATTTG
ACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCGTCATTTATGCTGGACCT
CTTGGTCACGAATCTCACAAGCTCATAGAGTATTTTGAGGCTGTTCCAGG
GGTTCCTAAAATTAAGGAAGCATACAATCCTGCAACATGGATGCTGGAGG
TCGGTAACATTTCAGTTGAGAATCAACTGGGAATTGATTTTGCTGAAGTT
TATGCCGATTCATCGCTTCATCAGAGGAATAAGGAACTTATCAAAGAGCT
TAGTACTCCACCACCTGGCTCGTCAGATCTCTACTTCCCAACCAAATACT
CTCAACCATTTTTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGG
TCTTATTGGAGAAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCT
TGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGA
CTTCCAAACAACAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTT
GTATTTTCCT
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