FC920364

Overview
NameFC920364
Unique NameFC920364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB14G_ARATH (ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.352e-16
Identity = 56/224 (25.00%), Postives = 104/224 (46.43%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGN---ISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYW------------RNPQYNAIRFGMTLVIAIFFGLIYW 634
            ++KR++I  E++ NPS++ +DEPTSGLD+  A  ++ T++     GRTVV TIHQPS  I+  FD+++LL  G  + Y       +   +EYF ++     +    NPA  +L++ N      + +      +   ++ +    K +  +L      +    +  +Y++      ++  W   W Y             R   +N +R    + +A   GL++W
Sbjct:  208 EKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGA-----ASSAVEYFSSLGFSTSL--TVNPADLLLDLANGIPPDTQKETSEQEQKTVKETLVSAYEKNISTKLKAELCNAESHSY--EYTKAAAKNLKSEQWCTTWWYQFTVLLQRGVRERRFESFNKLRIFQVISVAFLGGLLWW 422          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG7_DICDI (ABC transporter G family member 7 OS=Dictyostelium discoideum GN=abcG7 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 44/115 (38.26%), Postives = 75/115 (65.22%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLE 349
            ++KR++I   LV NPS++F+DEPTSGLD+  A  VM+ + N TV  G TV+C+IHQP  +I+  F++++++ + GR+IY G      + ++ Y  ++P   +     NPA ++L+
Sbjct:  388 EKKRVSIGCALVTNPSLLFLDEPTSGLDSLNALKVMKVLMNLTVIKGVTVICSIHQPRPEIYHLFNKIMIMLK-GRMIYCG------NDVLNYLSSLPNQYQCPNYTNPADFILD 495          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB25G_ARATH (ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGN 358
            +RKR++IA EL+ NPS++ +DEPTSGLDA AA  +++T+       G+TVV +IHQPS  +F+ FD +LLL   G+ ++ G    +    + YFE+V   P      NPA ++L++ N
Sbjct:  211 ERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSIHQPSSRVFQMFDTVLLLSE-GKCLFVG----KGRDAMAYFESVGFSPAF--PMNPADFLLDLAN 321          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 38/80 (47.50%), Postives = 59/80 (73.75%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 247
            +++R++IA+E++  P ++F+DEPTSGLD+ +A  V +T+R     GRTV+ +IHQPS ++FE FD L LL  GG+ +Y G
Sbjct:  197 EKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFG 275          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: ABCG3_MOUSE (ATP-binding cassette sub-family G member 3 OS=Mus musculus GN=Abcg3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 62/231 (26.84%), Postives = 103/231 (44.59%), Query Frame = 2
Query:    5 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGID----------------------FAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIY 631
            E RKR +IA+ELV    I+F+D+PT+GLD R    V+  +R     GRT++ +I+QP   IF+ FD L L+   G+V++ GP    +   +EYF +       +   NPA + L+V N    N L  +                       A +YA S L+   + ++ +L             T    PF  Q +    + + ++   P    I+  +T+++A   G  +
Sbjct:  182 ELRKRTSIAMELVTEHPILFLDDPTTGLDLRTTTDVILVLRRMSKKGRTIIFSINQPQYSIFKFFDSLTLV-ASGKVMFHGP----AQDALEYFRSAG--YNYESHNNPADFFLDVINGGFSNILDTEEDGHEDDKYEELFERQYQVTGKLANMYAQSPLYSETRAILDQLLGEQKLERSSAVETTCVTPFCHQLKWIICQSFKNFKGFPWVTVIQAIITVILATAVGTAF 405          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB27G_ARATH (ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 43/117 (36.75%), Postives = 74/117 (63.25%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGN 358
            +RKR+ I  E++ NPS++ +DEPTS LD+  A  +++ +      G+T+V TIHQPS  +F  FD+L++L RG  ++Y G    ++ + + YF ++   P +  A NPA ++L++ N
Sbjct:  295 ERKRVCIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAKAGKTIVTTIHQPSSRLFHRFDKLVVLSRGS-LLYFG----KASEAMSYFSSIGCSPLL--AMNPAEFLLDLVN 404          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: WBC30_ARATH (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 41/129 (31.78%), Postives = 76/129 (58.91%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEV--------GNISVE 370
            QRKR+ + VE+V  PS++ +DEPT+GLD+ ++ +++R +R     G  +   +HQPS  +++ FD++++L +GG  +Y     H S K IE + A  G+  + +  NP    +++        G+I++E
Sbjct:  610 QRKRVNVGVEMVMEPSLLILDEPTTGLDSASSQLLLRALRREALEGVNICMVVHQPSYTMYKMFDDMIILAKGGLTVY-----HGSVKKIEEYFADIGI-TVPDRVNPPDHYIDILEGIVKPDGDITIE 732          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: YO075_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YOL075C OS=Saccharomyces cerevisiae GN=YOL075C/YOL074C PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 40/119 (33.61%), Postives = 77/119 (64.71%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNI 361
            +++RL+I  ++++NPSI+F+DEPT+GLDA +A +V++T++    + GRT + +IHQP  DI    D++ +L + G V+Y   + +     I YFE++     + +  NPA + +++ ++
Sbjct:  190 EKRRLSIGTQMISNPSIMFLDEPTTGLDAYSAFLVIKTLKKLAKEDGRTFIMSIHQPRSDILFLLDQVCILSK-GNVVYCDKMDN----TIPYFESIG--YHVPQLVNPADYFIDLSSV 301          

HSP 2 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 49/173 (28.32%), Postives = 90/173 (52.02%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYF-EAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGS-----SDLYFPTKYSQ 505
            +++R+T+ V+L+ +P I+ +DEPTSGLD+  +A ++  +     + G+T++ TIHQP  ++F+ F  +LLL + GR  + G       ++I YF E     P      N A + L++ +++ +N+     +    +  L      +  E  +P P S     S   F T+YS+
Sbjct:  843 EKRRVTMGVQLLNDPPILLLDEPTSGLDSFTSATILEILEKLCREQGKTIIITIHQPRSELFKRFGNVLLLAKSGRTAFNG----SPDEMIAYFTELGYNCPSFT---NVADFFLDLISVNTQNEQNEISSRARVEKILSAWKANMDNESLSPTPISEKQQYSQESFFTEYSE 1008          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB6G_ARATH (ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 60/232 (25.86%), Postives = 101/232 (43.53%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLGIDFAEVYADSSLHQRNKE-------LIKEL----------------STPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 634
            +R+R++I ++++ +P ++F+DEPTSGLD+ +A  V++ ++    +G  V+ T+HQPS  +    D LL L RG  V    P       ++  F A  G P I E  N   + L++    +E   G   + V  +    QR  E        +KE                 +T   GSS +     ++ PF  +      +   +  R P+   IR G  LV       ++W
Sbjct:  237 ERRRVSIGIDIIHDPILLFLDEPTSGLDSTSALSVIKVLKRIAQSGSMVIMTLHQPSYRLLRLLDRLLFLSRGQTVFSGSPA------MLPRFFAEFGHP-IPEHENRTEFALDLIR-ELEGSAGGTRSLVEFNKGFRQRKAEPRSQTGLSLKEAISASISKGKLVSGATTTTHSSGSSPVSTIPTFANPFWVELAVLAKRSMTNSRRQPELFGIRLGAVLVTGFILATMFW 460          
BLAST of FC920364 vs. ExPASy Swiss-Prot
Match: AB20G_ARATH (ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 60/226 (26.55%), Postives = 107/226 (47.35%), Query Frame = 2
Query:    8 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVGNISVENQLG----IDF-----AEVYADSSLHQRNKELIKELSTP------PPGSSDL--YFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 634
            +R+R++I  +++ +P I+F+DEPTSGLD+ +A +V++ ++    +G  V+ +IHQPS  I    D+L+ L R G  +Y+G   H      E+   +P      E  N   + L++     ++  G    ++F     A+  +  S    N  L   +S          G+++L   F T ++ PF T+      +   +  R P+   IR G  LV  +    I+W
Sbjct:  255 ERRRVSIGTDIIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDKLIFLSR-GNTVYSGSPTHLPQFFSEFGHPIP------ENENKPEFALDLIRELEDSPEGTKSLVEFHKQWRAKQTSSQSRRNTNVSLKDAISASISRGKLVSGATNLRSSFQT-FANPFWTEMLVIGKRSILNSRRQPELFGIRLGAVLVTGMILATIFW 472          
The following BLAST results are available for this feature:
BLAST of FC920364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
AB14G_ARATH2.352e-1625.00ABC transporter G family member 14 OS=Arabidopsis ... [more]
ABCG7_DICDI6.844e-1638.26ABC transporter G family member 7 OS=Dictyostelium... [more]
AB25G_ARATH8.938e-1641.53ABC transporter G family member 25 OS=Arabidopsis ... [more]
AB11G_ARATH1.525e-1547.50ABC transporter G family member 11 OS=Arabidopsis ... [more]
ABCG3_MOUSE4.436e-1526.84ATP-binding cassette sub-family G member 3 OS=Mus ... [more]
AB27G_ARATH4.436e-1536.75ABC transporter G family member 27 OS=Arabidopsis ... [more]
WBC30_ARATH9.883e-1531.78Putative white-brown complex homolog protein 30 OS... [more]
YO075_YEAST1.291e-1433.61Uncharacterized ABC transporter ATP-binding protei... [more]
AB6G_ARATH3.755e-1425.86ABC transporter G family member 6 OS=Arabidopsis t... [more]
AB20G_ARATH6.406e-1426.55ABC transporter G family member 20 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32007D03EF RVDevelop1 Citrus clementina cDNA clone C32007D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920364 ID=FC920364; Name=FC920364; organism=Citrus clementina; type=EST; length=710bp
GACAGAGCAAAGGAAGAGATTGACGATTGCTGTAGAATTGGTTGCTAACC
CTTCTATCATCTTCATGGATGAGCCTACATCTGGGCTTGATGCTAGAGCT
GCTGCTATTGTCATGCGTACTGTTAGAAATACAGTGGATACAGGGAGAAC
AGTTGTGTGTACAATCCACCAGCCAAGCATAGACATTTTTGAAGCATTTG
ACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCGTCATTTATGCTGGACCT
CTTGGTCACGAATCTCACAAGCTCATAGAGTATTTTGAGGCTGTTCCAGG
GGTTCCTAAAATTAAGGAAGCATACAATCCTGCAACATGGATGCTGGAGG
TCGGTAACATTTCAGTTGAGAATCAACTGGGAATTGATTTTGCTGAAGTT
TATGCCGATTCATCGCTTCATCAGAGGAATAAGGAACTTATCAAAGAGCT
TAGTACTCCACCACCTGGCTCGTCAGATCTCTACTTCCCAACCAAATACT
CTCAACCATTTTTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGG
TCTTATTGGAGAAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCT
TGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGA
CTTCCAAACAACAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTT
GTATTTTCCT
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