FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920365_ssr23 microsatellite FC920365_ssr23:23..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: H90B2_HUMAN (Putative heat shock protein HSP 90-beta 2 OS=Homo sapiens GN=HSP90AB2P PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.001e-34
Identity = 76/108 (70.37%), Postives = 91/108 (84.26%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIAR-SGTKEFMEAL 446
            E ETFAFQAEI QL+SLIINTFYSNKEIFL ELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+   +TL+++D+GIGMTKADL+NNLGTIA+     E++E +
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNTQEHTLTLVDTGIGMTKADLINNLGTIAKFQDQTEYLEEM 118
[Close]
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.087e-32
Identity = 69/113 (61.06%), Postives = 90/113 (79.65%), Query Frame = 3 
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            V  A + ET AFQAEINQLLSL+IN+ YS+KEIFLREL+SN+SDALDK+RF ++T+   L  +P L + +IPD+   TL+I D+GIGM+  +LV NLGTIA SG++EF+EALA
Sbjct:    3 VENAPQRETHAFQAEINQLLSLVINSLYSHKEIFLRELVSNASDALDKLRFRAITEPELLADEPALELRLIPDEAKGTLTIEDTGIGMSHDELVKNLGTIAHSGSREFIEALA 115
[Close]
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: H90B4_HUMAN (Putative heat shock protein HSP 90-beta 4 OS=Homo sapiens GN=HSP90AB4P PE=5 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.307e-31
Identity = 68/100 (68.00%), Postives = 84/100 (84.00%), Query Frame = 3 
Query:  168 LSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            +SLIINTFYSNKEIFL+ELISN+SDALDKIR+ESLTD SKLD   EL I IIP+     L+++++GIGMTKADL+NNLG IA+SGT+ FMEA  + A++S
Sbjct:    1 MSLIINTFYSNKEIFLQELISNASDALDKIRYESLTDPSKLDGGKELKIDIIPNPRECILTLVNTGIGMTKADLINNLGAIAKSGTEAFMEAFQSCAEIS 100
[Close]
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_CHICK (Endoplasmin OS=Gallus gallus GN=HSP90B1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.767e-31
Identity = 67/121 (55.37%), Postives = 87/121 (71.90%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  DK  N L + D+GIGMTK +L+ NLGTIA+SGT EF+  +    D S
Sbjct:   64 QIKEIREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNMLHVTDTGIGMTKEELIKNLGTIAKSGTSEFLNKMTEMQDDS 184
[Close]
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_PIG (Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 1.145e-30
Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +A
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMA 179
[Close]
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_PONAB (Endoplasmin OS=Pongo abelii GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.953e-30
Identity = 64/114 (56.14%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178
[Close]
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_MACFA (Endoplasmin OS=Macaca fascicularis GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.953e-30
Identity = 64/114 (56.14%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178
[Close]
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_HUMAN (Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.953e-30
Identity = 64/114 (56.14%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178
[Close]
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_MOUSE (Endoplasmin OS=Mus musculus GN=Hsp90b1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 3.331e-30
Identity = 64/114 (56.14%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178
[Close]
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_CANFA (Endoplasmin OS=Canis familiaris GN=HSP90B1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.331e-30
Identity = 64/114 (56.14%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
H90B2_HUMAN1.001e-3470.37Putative heat shock protein HSP 90-beta 2 OS=Homo ... [more]
HTPG_MYXXD2.087e-3261.06Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]
H90B4_HUMAN2.307e-3168.00Putative heat shock protein HSP 90-beta 4 OS=Homo ... [more]
ENPL_CHICK8.767e-3155.37Endoplasmin OS=Gallus gallus GN=HSP90B1 PE=1 SV=1[more]
ENPL_PIG1.145e-3056.52Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3[more]
ENPL_PONAB1.953e-3056.14Endoplasmin OS=Pongo abelii GN=HSP90B1 PE=2 SV=1[more]
ENPL_MACFA1.953e-3056.14Endoplasmin OS=Macaca fascicularis GN=HSP90B1 PE=2... [more]
ENPL_HUMAN1.953e-3056.14Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1[more]
ENPL_MOUSE3.331e-3056.14Endoplasmin OS=Mus musculus GN=Hsp90b1 PE=1 SV=2[more]
ENPL_CANFA3.331e-3056.14Endoplasmin OS=Canis familiaris GN=HSP90B1 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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