FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920365_ssr23 microsatellite FC920365_ssr23:23..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_BOVIN (Endoplasmin OS=Bos taurus GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.331e-30
Identity = 64/114 (56.14%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_RAT (Endoplasmin OS=Rattus norvegicus GN=Hsp90b1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 7.421e-30
Identity = 63/114 (55.26%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  D+  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDREKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_THICR (Chaperone protein htpG OS=Thiomicrospira crunogena (strain XCL-2) GN=htpG PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.266e-29
Identity = 63/106 (59.43%), Postives = 85/106 (80.19%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 440
            S TET AFQ E+NQLL L+I+  YSNKEIFLREL+SN+SDALDK+RFES+++ +  + + EL I +  DK   T+SIID+GIGMT+ +++ N+GTIA SGTK+F+E
Sbjct:    2 SHTETHAFQTEVNQLLKLMIHALYSNKEIFLRELVSNASDALDKLRFESVSNDALSEGESELAIQVGFDKEARTVSIIDNGIGMTRDEVIANIGTIANSGTKKFLE 107          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.266e-29
Identity = 71/135 (52.59%), Postives = 95/135 (70.37%), Query Frame = 3
Query:   84 DRFLVERQVVSMASET-----ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            D  +V+R+  S++ +T     E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF +LTDK  +      +L I I  DK N  LSI D G+GMTK DL+ NLGTIA+SGT  F+E +  G D++
Sbjct:   57 DSEVVQRESESISRKTLRNSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEVMGEGDTAKLEIQIKLDKENKILSIRDRGVGMTKEDLIKNLGTIAKSGTSAFVEKMQTGGDLN 191          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_NITEU (Chaperone protein htpG OS=Nitrosomonas europaea GN=htpG PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 62/109 (56.88%), Postives = 85/109 (77.98%), Query Frame = 3
Query:  120 ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            A   E   FQAE NQLL L+I++ YSNKEIFLRELISN+SDA DK+RFE L+D +  ++ P+L I I  DK   T++IID+GIGM++ +++NN+GTIA+SGT+EF ++L
Sbjct:    4 AENIEHLNFQAEANQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEGLSDAALYESDPDLKIRIAYDKEARTITIIDNGIGMSRQEVINNIGTIAKSGTREFFDSL 112          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_DICDI (Endoplasmin homolog OS=Dictyostelium discoideum GN=grp94 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 3
Query:   99 ERQVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL--DAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E +   +  + E F FQ E+N+L+++IIN+ YS KEIFLRELISN+SDALDKIRF +LT+   L    Q  L IHI  DK NN L I D G+GMTK +LV NLGTIA+SGTKEF++ ++  A+ S
Sbjct:   39 EAEAKLIEEKGEKFTFQTEVNKLMNIIINSLYSKKEIFLRELISNASDALDKIRFLALTNADLLGEGEQSNLDIHIKIDKANNVLHITDRGVGMTKDELVRNLGTIAQSGTKEFIKKVSDSAESS 163          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_ARATH (Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.683e-29
Identity = 72/135 (53.33%), Postives = 93/135 (68.89%), Query Frame = 3
Query:   84 DRFLVERQVVSMASET-----ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            D  +V R+  SM+ +T     E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF +LTDK  L      +L I I  DK    LSI D GIGMTK DL+ NLGTIA+SGT  F+E + +  D++
Sbjct:   56 DSDVVHRESESMSKKTLRSNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKDVLGEGDTAKLEIQIKLDKAKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQSSGDLN 190          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_HALHL (Chaperone protein htpG OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.283e-29
Identity = 60/112 (53.57%), Postives = 87/112 (77.68%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            +S  +++ET  FQAE+ QLLSL+I++ YSN+E+FLRELISN+SDA+DK+RFE+L  +S  +  PEL I +  D    T+++ID+GIGM++ D++ NLGTIA SGT+ F+E L
Sbjct:    1 MSADTQSETLEFQAEVQQLLSLMIHSVYSNREVFLRELISNASDAIDKLRFEALQQESLYEDDPELKIRVEADPEARTVTVIDNGIGMSREDVIENLGTIAHSGTRRFLEQL 112          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.072e-28
Identity = 71/135 (52.59%), Postives = 92/135 (68.15%), Query Frame = 3
Query:   84 DRFLVERQVVSMA-----SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            D  + +R+  SM+     S+ E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF +LTDK  L      +L I I  DK    LSI D GIGMTK DL+ NLGTIA+SGT  F+E +    D++
Sbjct:   57 DSDVAKREAESMSMRNLRSDAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEILGEGDTAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLN 191          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_ALHEH (Chaperone protein htpG OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.828e-28
Identity = 60/105 (57.14%), Postives = 83/105 (79.05%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            ET  FQAE+ QLL L+I++ YSNK+IFLRELISN+SDA+DK+RF+SL D+S L+ + +L I +  DK   T+++ D+GIGMT+ ++  NLGTIARSGTK F++ L
Sbjct:    8 ETLEFQAEVQQLLHLMIHSLYSNKDIFLRELISNASDAIDKLRFQSLQDESLLEGEGDLRIRVSVDKDARTITVADNGIGMTRDEVAENLGTIARSGTKAFLDQL 112          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
ENPL_BOVIN3.331e-3056.14Endoplasmin OS=Bos taurus GN=HSP90B1 PE=2 SV=1[more]
ENPL_RAT7.421e-3055.26Endoplasmin OS=Rattus norvegicus GN=Hsp90b1 PE=1 S... [more]
HTPG_THICR1.266e-2959.43Chaperone protein htpG OS=Thiomicrospira crunogena... [more]
ENPL_HORVU1.266e-2952.59Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1[more]
HTPG_NITEU2.159e-2956.88Chaperone protein htpG OS=Nitrosomonas europaea GN... [more]
ENPL_DICDI2.159e-2955.20Endoplasmin homolog OS=Dictyostelium discoideum GN... [more]
ENPL_ARATH3.683e-2953.33Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD... [more]
HTPG_HALHL6.283e-2953.57Chaperone protein htpG OS=Halorhodospira halophila... [more]
ENPL_CATRO1.072e-2852.59Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
HTPG_ALHEH1.828e-2857.14Chaperone protein htpG OS=Alkalilimnicola ehrliche... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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