FC920366

Overview
NameFC920366
Unique NameFC920366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14126 contig Ccv1_Contig14126:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.447e-56
Identity = 109/240 (45.42%), Postives = 144/240 (60.00%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFE 714
            EA ML G+A K +W+    + G      KP++V  +  QVCWEKF  Y+            +  +N    ++ VDE TI +  ILG T TG+F+D+  L+DL+   N     +  IHVD ASG    PF+ P LEWDFRLP V SIN SGHKYGLVY GVGW++WR K+ LP+ELVF ++YLG   PT  +NFS+ +SQII QYY F+R G+EGY+ I       A  L + + + G FE
Sbjct:  122 EACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLNDLVEDYNNTHDNEVVIHVDGASGAMFTPFVEPGLEWDFRLPNVVSINTSGHKYGLVYPGVGWILWRDKEYLPEELVFDVSYLGGHMPTMAINFSRSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAVAETGLFE 361          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.998e-46
Identity = 101/239 (42.26%), Postives = 136/239 (56.90%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXX-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT----KKNEETGWDTPIHVDAASGGFIAPF--------LYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARA 678
            EAIML GLA K++W+ + K  GK   KPNI+  +  QV  EKF RYF             +++++P    + VDENTI    ILG+T TG  E+V+ + D+L+    K  + +  D PIH D ASGGFI PF         Y    W F  P V S+N SGHK+GL   G+GWV+WR +  L DEL F + YLG  + TF LNFS+   Q++ QY+ F+ LG  GY+   +N +  ARA
Sbjct:  156 EAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIHADGASGGFIIPFGFEKEHMKAYGMERWGFNHPRVVSMNTSGHKFGLTTPGLGWVLWRDESLLADELRFKLKYLGGVEETFGLNFSRPGFQVVHQYFNFVSLGHSGYRTQFQNSLFVARA 394          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_UNCMA (L-tyrosine decarboxylase OS=Uncultured methanogenic archaeon RC-I GN=mfnA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17
Identity = 59/172 (34.30%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  190 NPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQG 705
            +P +   L+D+NTI + A+ G+T  G+ + ++ +  L  +       D  +HVDAA GGF+ PF+    ++DF +P V+SI +  HK GL     G +++R+ + L   L  +  YL S   T       G+S   A Y     LG  GY+ I+  CM N R LRE LE  G
Sbjct:  146 DPSEMAALIDKNTIALVAVAGTTEFGQIDPIEEIGRLAQEH------DLYLHVDAAFGGFVIPFMDRPAKFDFEIPGVQSITIDPHKMGLSTIPSGGLLYRS-ESLMKVLEINAQYLTSMVQTSLAGTRSGASAASA-YAVLQYLGRAGYREIVATCMENTRILREQLEDMG 309          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METKA (L-tyrosine decarboxylase OS=Methanopyrus kandleri GN=mfnA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.313e-17
Identity = 68/211 (32.23%), Postives = 100/211 (47.39%), Query Frame = 1
Query:   88 IVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVE-LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL---YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYL-GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQG 705
            I+  A     +EK AR              Y V   V AV+ L+  +T  +  I+G+T TG  +D++ L D+     E+ G   P+HVDAA GGF APFL   YP   + F L  V S+ V  HK GLV    G +V+R  D+ P  +  +  YL G     +T+  ++  + ++A Y   + LG EGY+ I   C      + E   + G
Sbjct:   99 IIVPATRHFSFEKAARMLRMKLVEAPLRSDYTV--DVDAVQDLISRDTALIVGIVGTTETGSVDDIEALSDVA----EDHG--VPLHVDAAFGGFTAPFLREEYPLPRFGFDLEAVVSVTVDPHKMGLVPPPAGGIVFR-DDEFPKAIEVYAPYLSGGGASQYTITGTRPGAPVLALYANILELGEEGYRRIAFRCYEETLKVAEKARELG 300          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METTP (L-tyrosine decarboxylase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=mfnA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.451e-16
Identity = 49/151 (32.45%), Postives = 78/151 (51.66%), Query Frame = 1
Query:  211 LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCM 663
            L+D+ T+C+  I G+T  G+ + +  L +L  +         P+HVDAA GGF+ PFL  D  WDFR   V+SI +  HK G+     G +++R+ D L   L     YL   +   +L  ++  +   A Y   + LG +GY+ ++  CM
Sbjct:  154 LIDDRTVCLVGIAGTTEFGQVDPIGDLSELAIENG------IPLHVDAAFGGFVLPFLEKDCMWDFRAEGVQSITIDPHKMGMSPIPAGGLIFRSSDPL-RRLETETYYLTVSRQA-SLTGTRSGAAAAATYAVIMHLGIDGYRKVVRRCM 296          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_ARCFU (L-tyrosine decarboxylase OS=Archaeoglobus fulgidus GN=mfnA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.476e-16
Identity = 60/210 (28.57%), Postives = 97/210 (46.19%), Query Frame = 1
Query:   76 DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQG 705
            + PNIV        +EK                 Y V +  +  +L+DENT+ +  I G+T  G+ + +  L  L  ++  E      +HVDAA GG + PF+     +DF+   V SI +  HK G+     G +++R +  L   L     YL S +  FTL  ++  + + + Y     LGFEG + +++NC+ N R L E +   G
Sbjct:   99 ENPNIVIPKTAHFSFEKIGDILGVKIKRAGVDEEYKV-DVGQVEDLMDENTVAIVGIAGTTELGQIDPIVELSKLAEERQVE------LHVDAAFGGLVIPFMDNPYPFDFQNRGVSSITIDPHKMGMATIPAGGIIFRNESYL-RALEVETPYLTS-KTQFTLTGTRPGTGVASAYAVLKSLGFEGMREVVKNCLKNTRILVEEMRDLG 299          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METLZ (L-tyrosine decarboxylase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=mfnA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.229e-15
Identity = 64/208 (30.77%), Postives = 97/208 (46.63%), Query Frame = 1
Query:   82 PNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQG 705
            PNIV  A+    ++K                 Y V +  K  E+VD+NTI V+AI G+T  G  +DV+ +  +  +       D   HVDAA GG + PFL     +DF +P V SI++  HK G+     G ++ R  +     L     YL + +   TL  ++  + +   Y     LG EG++ ++  CM N R L EG+E  G
Sbjct:  110 PNIVVPASAHFSFDKTCDILGLEMRTVPYGKNYTV-DCDKMAEMVDKNTISVSAIAGTTEYGMIDDVERIAKIALEN------DLFFHVDAAFGGMVIPFLPNPAPFDFEVPGVSSISLDPHKMGMSTIPCGCLLLREPEQF-GTLNVDTPYL-TVKKECTLAGTRPGADVAGAYAVIKLLGREGFRAVVAGCMENTRRLIEGMEAFG 308          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METHJ (L-tyrosine decarboxylase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=mfnA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 65/213 (30.52%), Postives = 99/213 (46.48%), Query Frame = 1
Query:   67 KPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQG 705
            K   +PNI+  A+    +EK A                Y M    A EL+D+NT C+  + G+T  G  + +  L  L  ++         +HVDAA GG++ PFL     +DF +P V SI V  HK GL     G ++ R +    + LV    YL + Q  ++L  ++  + + A Y     LG +G K ++  CM N R + EG+E  G
Sbjct:  104 KNVKEPNIIVPASAHFSFEK-ACGMMDIEMRVVPVDEQYRMKTDAAGELIDKNTCCIVGVAGTTEYGMTDPIPALGKLAEQEGVH------LHVDAAFGGYVLPFLDDAPPFDFSVPGVGSIAVDPHKMGLSTIPSGVLMVRDERVFCNLLV-ETPYLTTKQ-AYSLTGTRPGASVAAAYAVMAYLGRKGMKALVTGCMENTRRMIEGMEAFG 307          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_PYRKO (L-tyrosine decarboxylase OS=Pyrococcus kodakaraensis GN=mfnA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.669e-15
Identity = 55/177 (31.07%), Postives = 84/177 (47.46%), Query Frame = 1
Query:  181 YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 699
            Y +N     + + + TI +  I G+T  G  +D+  L DL         +  P+HVDAA GGF+ PF     Y   ++DFRL  VKSI +  HK G+V    G +++R K  L    V      G      T+  ++  +  +A +     LGF+GYK +++  M  AR     L+K
Sbjct:  144 YTVNVKDVEKKITDRTIGIVGIAGTTGLGVVDDIPALSDLALD------YGLPLHVDAAFGGFVIPFAKALGYEIPDFDFRLKGVKSITIDPHKMGMVPIPAGGIIFREKKFLDSISVLAPYLAGGKIWQATITGTRPGANALAVWAMIKHLGFDGYKEVVKEKMELARWFASELKK 314          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METB6 (L-tyrosine decarboxylase OS=Methanoregula boonei (strain 6A8) GN=mfnA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.669e-15
Identity = 60/213 (28.17%), Postives = 98/213 (46.01%), Query Frame = 1
Query:   67 KPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQG 705
            +P   PN+V   +V   ++K                   +M   KA EL+D+NTIC+  + G+T  G  + +  L  +  ++      D  +HVDAA GG + PFL   + +DF LP V ++ V  HK G+     G ++ R + D+ D L     YL + +  +TL  ++  + +         LG  G K ++  CM N   L  G+E +G
Sbjct:  104 RPGSSPNVVLPESVHFSFKKACDLLSLEMRSVPLGTDRRIMAD-KAAELIDKNTICLVGVAGTTEYGMVDPIADLAKIAAQQ------DIFLHVDAAFGGMVIPFLPKPVPFDFALPGVTTLAVDPHKMGMSTIPAGVLLTR-EPDMLDALNIDTPYL-TVKKGYTLGGTRPGAPMAGALAVLDYLGISGMKAVVAGCMKNTERLIAGMETRG 307          
The following BLAST results are available for this feature:
BLAST of FC920366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DCEA_LISMO2.447e-5645.42Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCE_YEAST2.998e-4642.26Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
MFNA_UNCMA1.005e-1734.30L-tyrosine decarboxylase OS=Uncultured methanogeni... [more]
MFNA_METKA1.313e-1732.23L-tyrosine decarboxylase OS=Methanopyrus kandleri ... [more]
MFNA_METTP1.451e-1632.45L-tyrosine decarboxylase OS=Methanosaeta thermophi... [more]
MFNA_ARCFU2.476e-1628.57L-tyrosine decarboxylase OS=Archaeoglobus fulgidus... [more]
MFNA_METLZ1.229e-1530.77L-tyrosine decarboxylase OS=Methanocorpusculum lab... [more]
MFNA_METHJ2.096e-1530.52L-tyrosine decarboxylase OS=Methanospirillum hunga... [more]
MFNA_PYRKO4.669e-1531.07L-tyrosine decarboxylase OS=Pyrococcus kodakaraens... [more]
MFNA_METB64.669e-1528.17L-tyrosine decarboxylase OS=Methanoregula boonei (... [more]

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Properties
Property NameValue
Genbank descriptionC32007D05EF RVDevelop1 Citrus clementina cDNA clone C32007D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920366 ID=FC920366; Name=FC920366; organism=Citrus clementina; type=EST; length=734bp
GAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAA
GAGAAAAGAGCAAGGCAAACCCTATGATAAGCCCAATATAGTCACTGGAG
CTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTACTTTGAGGTTGAG
CTGAAGGAGGTGAAACTGGAAGAGGGATATTATGTGATGAATCCTGTGAA
AGCTGTTGAGTTGGTAGATGAGAACACCATTTGTGTTGCAGCCATTCTGG
GATCAACCTTGACGGGAGAATTTGAGGATGTTAAGCTTCTTCATGACCTC
CTCACCAAAAAGAATGAGGAGACCGGTTGGGACACCCCCATTCATGTTGA
TGCTGCTAGCGGCGGATTTATTGCTCCTTTTCTCTATCCAGACCTTGAAT
GGGATTTCCGTTTGCCACTGGTGAAGAGCATTAATGTCAGTGGTCACAAG
TACGGCCTTGTATATGCAGGTGTTGGCTGGGTTGTCTGGAGGACCAAAGA
TGACTTGCCGGATGAACTTGTCTTTCACATCAACTACCTTGGATCTGATC
AACCGACTTTCACCCTCAACTTCTCAAAAGGCTCCAGTCAAATAATTGCT
CAATATTATCAGTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTAT
GGAAAATTGCATGGGGAATGCTAGAGCGCTAAGAGAAGGATTAGAGAAAC
AGGGCGCTTTTGAATTCTCTCCCAGATGTGGCGT
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