FC920368

Overview
NameFC920368
Unique NameFC920368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:4..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920368 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.217e-59
Identity = 85/106 (80.19%), Postives = 96/106 (90.57%), Query Frame = 1
Query:  283 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENTR 600
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAEN +
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNK 106          

HSP 2 Score: 68.1662 bits (165), Expect = 3.217e-59
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  594 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAV 719
            +K ARVL+VCSE TAVTFRGP++T +DSLVGQALF DGAAA+
Sbjct:  105 NKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAI 146          
BLAST of FC920368 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.910e-54
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 1
Query:  367 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENTR 600
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAEN +
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 78          

HSP 2 Score: 80.8777 bits (198), Expect = 4.910e-54
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 3
Query:  594 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAV 719
            +KGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALFGDGAAA+
Sbjct:   77 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAAL 118          
BLAST of FC920368 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.411e-40
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1
Query:  424 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENTR 600
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAEN +
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 58          

HSP 2 Score: 80.8777 bits (198), Expect = 2.411e-40
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 3
Query:  594 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAV 719
            +KGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALFGDGAAA+
Sbjct:   57 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAAL 98          
BLAST of FC920368 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.633e-24
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 3
Query:  594 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAV 719
            +KGARVLVVCSEITAVTFRGP+DTHLDSLVGQALFGDGAAAV
Sbjct:   24 NKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAV 65          

HSP 2 Score: 51.6026 bits (122), Expect = 1.633e-24
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1
Query:  526 MMYQQGCFAGGTVLRLAKDLAENTR 600
            MMYQQGCFAGGTVLRLAKDLAEN +
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNK 25          
BLAST of FC920368 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.287e-18
Identity = 54/196 (27.55%), Postives = 99/196 (50.51%), Query Frame = 1
Query:    4 TLTKHEPQTYSLRVQLEMATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAE 591
            ++ +H+ Q   ++V ++       R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+
Sbjct: 2755 SVQQHQKQQQKVQV-IQQQQQPLSRLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAK 2945          

HSP 2 Score: 29.6462 bits (65), Expect = 2.287e-18
Identity = 14/37 (37.84%), Postives = 23/37 (62.16%), Query Frame = 3
Query:  606 RVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAA 716
            R+LVVC+E+ ++ F        D +V  ++F DG+AA
Sbjct: 2951 RILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAA 2985          
The following BLAST results are available for this feature:
BLAST of FC920368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY3.217e-5980.19Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA4.910e-5492.31Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA2.411e-4088.14Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO1.633e-2495.24Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI2.287e-1827.55Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC32007D07EF RVDevelop1 Citrus clementina cDNA clone C32007D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920368 ID=FC920368; Name=FC920368; organism=Citrus clementina; type=EST; length=720bp
GGCACACTCACCAAGCACGAGCCACAAACATATTCATTAAGGGTTCAACT
TGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCC
CGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAAC
CAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATAT
GACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGATTA
AGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCCAAC
ATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTGGT
GGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAAG
AATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCACC
TCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGATCGG
CCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTTTCG
CCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACACAAGG
GCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCAGTCACTTTCCGC
GGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTGTTCGG
TGATGGTGCTGCTGCTGTGA
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